Variant report

Variant	rs11165297
Chromosome Location	chr1:95532174-95532175
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10465759	0.93[JPT][hapmap]
rs11590106	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11801110	0.92[JPT][hapmap];0.83[AMR][1000 genomes]
rs12129041	0.80[JPT][hapmap]
rs12717800	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12751633	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12755096	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12760863	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17112857	0.93[JPT][hapmap]
rs2391390	0.93[JPT][hapmap]
rs2391391	0.82[JPT][hapmap]
rs34850224	0.83[AMR][1000 genomes]
rs34923964	0.83[AMR][1000 genomes]
rs35328371	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3890785	0.93[JPT][hapmap];0.83[AMR][1000 genomes]
rs4131811	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4300274	0.83[AMR][1000 genomes]
rs4387224	0.83[AMR][1000 genomes]
rs4540701	0.83[AMR][1000 genomes]
rs6662345	0.93[JPT][hapmap]
rs6669262	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6671842	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.96[GIH][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6674467	0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs6674604	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6678809	0.93[JPT][hapmap];0.83[AMR][1000 genomes]
rs6679106	0.93[JPT][hapmap]
rs6684137	0.93[JPT][hapmap];0.83[AMR][1000 genomes]
rs6687351	0.93[JPT][hapmap]
rs6689195	0.83[AMR][1000 genomes]
rs6695561	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6698894	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6704022	0.83[AMR][1000 genomes]
rs67440829	0.91[EUR][1000 genomes]
rs71652601	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs71652602	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71654404	0.81[AMR][1000 genomes]
rs71654405	0.83[AMR][1000 genomes]
rs71654406	0.83[AMR][1000 genomes]
rs71654407	0.83[AMR][1000 genomes]
rs71654408	0.83[AMR][1000 genomes]
rs74101985	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7540821	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7543156	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9661047	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95488200-95537600	Weak transcription	Right Ventricle	heart
2	chr1:95505600-95537400	Weak transcription	Right Atrium	heart
3	chr1:95506000-95537800	Weak transcription	Pancreas	Pancrea
4	chr1:95509400-95532800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:95509400-95534200	Weak transcription	Fetal Intestine Small	intestine
6	chr1:95515600-95535800	Weak transcription	Fetal Lung	lung
7	chr1:95516000-95537200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:95516200-95532600	Weak transcription	Brain Anterior Caudate	brain
9	chr1:95517400-95537800	Weak transcription	Esophagus	oesophagus
10	chr1:95518000-95537000	Weak transcription	Psoas Muscle	Psoas
11	chr1:95518000-95537200	Weak transcription	HSMM	muscle
12	chr1:95521600-95537400	Weak transcription	Brain Germinal Matrix	brain
13	chr1:95523200-95537600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr1:95523400-95532600	Weak transcription	Brain Angular Gyrus	brain
15	chr1:95523400-95537800	Weak transcription	Left Ventricle	heart
16	chr1:95523600-95534400	Weak transcription	Small Intestine	intestine
17	chr1:95523600-95537200	Weak transcription	NHLF	lung
18	chr1:95523800-95537200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr1:95523800-95537200	Weak transcription	HSMMtube	muscle
20	chr1:95523800-95537800	Weak transcription	Fetal Thymus	thymus
21	chr1:95524000-95537200	Weak transcription	NH-A	brain
22	chr1:95524400-95534600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:95524400-95537200	Weak transcription	Osteobl	bone
24	chr1:95524600-95532800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr1:95524600-95537400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr1:95524600-95537600	Weak transcription	Colonic Mucosa	Colon
27	chr1:95524600-95537600	Weak transcription	Placenta	Placenta
28	chr1:95525000-95537200	Weak transcription	Primary B cells from cord blood	blood
29	chr1:95525000-95537400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr1:95525200-95537400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr1:95525800-95537600	Weak transcription	Fetal Brain Male	brain
32	chr1:95526000-95537400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr1:95526600-95532600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr1:95526600-95532600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr1:95526600-95537400	Weak transcription	HMEC	breast
36	chr1:95526800-95537200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr1:95527200-95537200	Weak transcription	Fetal Kidney	kidney
38	chr1:95527400-95534400	Weak transcription	Stomach Mucosa	stomach
39	chr1:95528200-95532200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr1:95528200-95537200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr1:95528200-95537200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr1:95528200-95537200	Weak transcription	Colon Smooth Muscle	Colon
43	chr1:95528200-95537400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:95528400-95532600	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr1:95528600-95537400	Weak transcription	Fetal Brain Female	brain
46	chr1:95528800-95532600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr1:95529200-95537200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr1:95529200-95537200	Weak transcription	Brain Hippocampus Middle	brain
49	chr1:95529200-95537200	Weak transcription	NHDF-Ad	bronchial
50	chr1:95529200-95537400	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links