Variant report

Variant	rs67440829
Chromosome Location	chr1:95436390-95436391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11165297	0.91[EUR][1000 genomes]
rs12717800	0.96[EUR][1000 genomes]
rs12751633	0.96[EUR][1000 genomes]
rs12760863	0.89[EUR][1000 genomes]
rs35328371	0.96[EUR][1000 genomes]
rs6669262	0.96[EUR][1000 genomes]
rs6671842	0.91[EUR][1000 genomes]
rs6674604	0.93[EUR][1000 genomes]
rs6695561	0.89[EUR][1000 genomes]
rs6698894	0.91[EUR][1000 genomes]
rs71652602	0.94[EUR][1000 genomes]
rs7540821	0.96[EUR][1000 genomes]
rs7543156	0.90[EUR][1000 genomes]
rs9661047	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410042	chr1:95435114-95437212	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95422000-95450800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:95428800-95436400	Weak transcription	Lung	lung
3	chr1:95428800-95439200	Weak transcription	Aorta	Aorta
4	chr1:95429000-95436400	Weak transcription	Fetal Kidney	kidney
5	chr1:95429000-95436400	Weak transcription	HSMMtube	muscle
6	chr1:95429000-95437600	Weak transcription	Right Ventricle	heart
7	chr1:95429000-95439800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr1:95429000-95467600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr1:95429200-95436400	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:95429200-95440200	Weak transcription	Fetal Intestine Small	intestine
11	chr1:95429600-95437600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr1:95429800-95436400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:95429800-95436400	Weak transcription	Right Atrium	heart
14	chr1:95435000-95436400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr1:95435400-95436400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:95435800-95438000	Enhancers	Placenta	Placenta
17	chr1:95436200-95436600	Enhancers	HUVEC	blood vessel
18	chr1:95436200-95436800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:95436200-95436800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:95436200-95437000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:95436200-95437200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:95436200-95437400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr1:95436200-95437600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:95436200-95437600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:95436200-95438200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr1:95436200-95438200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:95436200-95438200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr1:95436200-95438200	Enhancers	HMEC	breast
29	chr1:95436200-95438200	Enhancers	NHLF	lung
30	chr1:95436200-95438200	Enhancers	Osteobl	bone
31	chr1:95436200-95440000	Enhancers	NHDF-Ad	bronchial
32	chr1:95436200-95441200	Enhancers	HSMM	muscle

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