Variant report

Variant	rs6698894
Chromosome Location	chr1:95528039-95528040
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11165297	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11590106	0.86[CEU][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11801110	0.83[AMR][1000 genomes]
rs12717800	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12751633	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12755096	0.86[CEU][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12760863	0.93[CEU][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34850224	0.83[AMR][1000 genomes]
rs34923964	0.83[AMR][1000 genomes]
rs35328371	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3890785	0.83[AMR][1000 genomes]
rs4131811	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4300274	0.83[AMR][1000 genomes]
rs4387224	0.83[AMR][1000 genomes]
rs4540701	0.83[AMR][1000 genomes]
rs6669262	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6671842	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6674467	0.81[AMR][1000 genomes]
rs6674604	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6678809	0.83[AMR][1000 genomes]
rs6684137	0.83[AMR][1000 genomes]
rs6689195	0.83[AMR][1000 genomes]
rs6695561	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6704022	0.83[AMR][1000 genomes]
rs67440829	0.91[EUR][1000 genomes]
rs71652601	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs71652602	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71654404	0.81[AMR][1000 genomes]
rs71654405	0.83[AMR][1000 genomes]
rs71654406	0.83[AMR][1000 genomes]
rs71654407	0.83[AMR][1000 genomes]
rs71654408	0.83[AMR][1000 genomes]
rs74101985	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7540821	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7543156	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9661047	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95488200-95537600	Weak transcription	Right Ventricle	heart
2	chr1:95491600-95529600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr1:95505600-95537400	Weak transcription	Right Atrium	heart
4	chr1:95506000-95537800	Weak transcription	Pancreas	Pancrea
5	chr1:95509400-95532800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:95509400-95534200	Weak transcription	Fetal Intestine Small	intestine
7	chr1:95514600-95530200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:95515600-95535800	Weak transcription	Fetal Lung	lung
9	chr1:95516000-95537200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:95516200-95532600	Weak transcription	Brain Anterior Caudate	brain
11	chr1:95517400-95537800	Weak transcription	Esophagus	oesophagus
12	chr1:95518000-95537000	Weak transcription	Psoas Muscle	Psoas
13	chr1:95518000-95537200	Weak transcription	HSMM	muscle
14	chr1:95518400-95529400	Weak transcription	Ovary	ovary
15	chr1:95521600-95537400	Weak transcription	Brain Germinal Matrix	brain
16	chr1:95523200-95537600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:95523400-95532600	Weak transcription	Brain Angular Gyrus	brain
18	chr1:95523400-95537800	Weak transcription	Left Ventricle	heart
19	chr1:95523600-95528800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr1:95523600-95530200	Weak transcription	Fetal Intestine Large	intestine
21	chr1:95523600-95531200	Weak transcription	Lung	lung
22	chr1:95523600-95534400	Weak transcription	Small Intestine	intestine
23	chr1:95523600-95537200	Weak transcription	NHLF	lung
24	chr1:95523800-95537200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr1:95523800-95537200	Weak transcription	HSMMtube	muscle
26	chr1:95523800-95537800	Weak transcription	Fetal Thymus	thymus
27	chr1:95524000-95528400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr1:95524000-95529400	Weak transcription	Dnd41	blood
29	chr1:95524000-95537200	Weak transcription	NH-A	brain
30	chr1:95524400-95528800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr1:95524400-95529000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:95524400-95534600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:95524400-95537200	Weak transcription	Osteobl	bone
34	chr1:95524600-95529600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr1:95524600-95532800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr1:95524600-95537400	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr1:95524600-95537600	Weak transcription	Colonic Mucosa	Colon
38	chr1:95524600-95537600	Weak transcription	Placenta	Placenta
39	chr1:95524800-95528800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr1:95525000-95537200	Weak transcription	Primary B cells from cord blood	blood
41	chr1:95525000-95537400	Weak transcription	Rectal Smooth Muscle	rectum
42	chr1:95525200-95537400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr1:95525400-95528400	Weak transcription	Primary T cells from cord blood	blood
44	chr1:95525800-95529600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr1:95525800-95537600	Weak transcription	Fetal Brain Male	brain
46	chr1:95526000-95537400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr1:95526200-95531000	Weak transcription	Fetal Stomach	stomach
48	chr1:95526600-95529200	Strong transcription	Brain Hippocampus Middle	brain
49	chr1:95526600-95530200	Strong transcription	Duodenum Mucosa	Duodenum
50	chr1:95526600-95532600	Weak transcription	Brain Inferior Temporal Lobe	brain

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