The 2.0 version of rSNPBase

Variant report

Variant rs7540821
Chromosome Location chr1:95486751-95486752
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95447000-95490800 Weak transcription Fetal Intestine Large intestine
2 chr1:95448200-95491000 Weak transcription Primary B cells from cord blood blood
3 chr1:95469200-95487200 Weak transcription Small Intestine intestine
4 chr1:95476000-95490800 Weak transcription Primary T cells from cord blood blood
5 chr1:95480000-95487000 Weak transcription Brain Angular Gyrus brain
6 chr1:95480000-95508800 Weak transcription Skeletal Muscle Female skeletal muscle
7 chr1:95480200-95487000 Weak transcription HUVEC blood vessel
8 chr1:95480200-95487200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr1:95480200-95487200 Weak transcription Ovary ovary
10 chr1:95480200-95490600 Weak transcription Liver Liver
11 chr1:95480600-95487200 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr1:95480600-95487800 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr1:95480600-95488000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr1:95480600-95491400 Weak transcription Fetal Intestine Small intestine
15 chr1:95480800-95490800 Weak transcription Left Ventricle heart
16 chr1:95481000-95487000 Weak transcription Fetal Brain Male brain
17 chr1:95481400-95486800 Weak transcription Brain Hippocampus Middle brain
18 chr1:95482400-95487400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr1:95483000-95487000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr1:95483400-95487400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr1:95484000-95487200 Weak transcription Pancreas Pancrea
22 chr1:95484000-95491000 Weak transcription Psoas Muscle Psoas
23 chr1:95484200-95488800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr1:95484400-95486800 Weak transcription Fetal Muscle Leg muscle
25 chr1:95484600-95486800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr1:95484600-95487000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr1:95484600-95489000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr1:95484600-95491000 Weak transcription Thymus Thymus
29 chr1:95484600-95495000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
30 chr1:95484800-95487200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr1:95484800-95487200 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr1:95484800-95489400 Weak transcription HUES48 Cell Line embryonic stem cell
33 chr1:95484800-95490000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr1:95484800-95491600 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr1:95484800-95494600 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr1:95485000-95487000 Weak transcription Fetal Kidney kidney
37 chr1:95485000-95487000 Weak transcription Stomach Mucosa stomach
38 chr1:95485000-95487000 Weak transcription NHDF-Ad bronchial
39 chr1:95485000-95487200 Weak transcription Adipose Nuclei Adipose
40 chr1:95485000-95487400 Weak transcription ES-I3 Cell Line embryonic stem cell
41 chr1:95485000-95500400 Weak transcription Placenta Amnion Placenta Amnion
42 chr1:95485200-95487000 Weak transcription A549 lung
43 chr1:95485200-95487000 Weak transcription HSMMtube muscle
44 chr1:95485200-95507000 Weak transcription Fetal Heart heart
45 chr1:95486200-95487400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr1:95486400-95487000 Enhancers Muscle Satellite Cultured Cells --
47 chr1:95486400-95487200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
48 chr1:95486400-95487200 Enhancers Duodenum Smooth Muscle Duodenum
49 chr1:95486400-95487200 Enhancers Fetal Lung lung
50 chr1:95486400-95487200 Enhancers HSMM muscle

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Last update: Aug 31, 2015