Variant report

Variant	rs71652601
Chromosome Location	chr1:95489819-95489820
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95457235..95459150-chr1:95488064..95489902,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11165297	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11590106	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12717800	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12751633	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12755096	0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12760863	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35328371	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4131811	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6669262	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6671842	0.88[AMR][1000 genomes]
rs6674604	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6695561	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6698894	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs71652602	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs74101985	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7540821	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7543156	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9661047	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
2	chr1:95448200-95491000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:95476000-95490800	Weak transcription	Primary T cells from cord blood	blood
4	chr1:95480000-95508800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:95480200-95490600	Weak transcription	Liver	Liver
6	chr1:95480600-95491400	Weak transcription	Fetal Intestine Small	intestine
7	chr1:95480800-95490800	Weak transcription	Left Ventricle	heart
8	chr1:95484000-95491000	Weak transcription	Psoas Muscle	Psoas
9	chr1:95484600-95491000	Weak transcription	Thymus	Thymus
10	chr1:95484600-95495000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:95484800-95490000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:95484800-95491600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr1:95484800-95494600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:95485000-95500400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr1:95485200-95507000	Weak transcription	Fetal Heart	heart
16	chr1:95486400-95490400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr1:95486600-95494600	Weak transcription	HepG2	liver
18	chr1:95487400-95494600	Weak transcription	Esophagus	oesophagus
19	chr1:95487600-95490800	Weak transcription	Brain Germinal Matrix	brain
20	chr1:95487800-95490200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:95487800-95490200	Enhancers	NH-A	brain
22	chr1:95487800-95490400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr1:95487800-95491200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr1:95488000-95490200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr1:95488000-95490200	Enhancers	NHLF	lung
26	chr1:95488000-95490400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:95488000-95490800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:95488000-95507000	Weak transcription	Ovary	ovary
29	chr1:95488200-95490200	Weak transcription	Fetal Muscle Leg	muscle
30	chr1:95488200-95490200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr1:95488200-95490200	Enhancers	HSMM	muscle
32	chr1:95488200-95490800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr1:95488200-95491000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr1:95488200-95491200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr1:95488200-95491400	Weak transcription	Fetal Stomach	stomach
36	chr1:95488200-95492800	Weak transcription	Fetal Brain Male	brain
37	chr1:95488200-95499400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:95488200-95505400	Weak transcription	Pancreas	Pancrea
39	chr1:95488200-95507000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr1:95488200-95537600	Weak transcription	Right Ventricle	heart
41	chr1:95488400-95490600	Weak transcription	Fetal Brain Female	brain
42	chr1:95488400-95490800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr1:95488400-95491000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr1:95488400-95491200	Weak transcription	Brain Hippocampus Middle	brain
45	chr1:95488400-95494200	Weak transcription	Brain Anterior Caudate	brain
46	chr1:95488400-95494800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr1:95488400-95507000	Weak transcription	Brain Angular Gyrus	brain
48	chr1:95488400-95507800	Weak transcription	Brain Substantia Nigra	brain
49	chr1:95488600-95491000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr1:95488600-95493600	Weak transcription	Primary T cells fromperipheralblood	blood

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