Variant report

Variant	rs6680722
Chromosome Location	chr1:196477499-196477500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:196475082..196477733-chr6:43082287..43084890,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10737671	0.90[EUR][1000 genomes]
rs10737676	0.89[EUR][1000 genomes]
rs10737678	0.89[EUR][1000 genomes]
rs10754192	0.89[EUR][1000 genomes]
rs10754194	0.89[EUR][1000 genomes]
rs10754197	0.88[EUR][1000 genomes]
rs10801536	0.89[EUR][1000 genomes]
rs10922081	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10922087	0.89[EUR][1000 genomes]
rs12072649	0.89[EUR][1000 genomes]
rs12133987	0.89[EUR][1000 genomes]
rs1339947	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1339949	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1339951	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1360143	0.86[EUR][1000 genomes]
rs1416960	0.89[EUR][1000 genomes]
rs1416966	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1416970	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1416971	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1538683	0.89[EUR][1000 genomes]
rs1556961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1571489	0.85[EUR][1000 genomes]
rs16839856	0.80[EUR][1000 genomes]
rs16839872	0.82[EUR][1000 genomes]
rs16839878	0.82[EUR][1000 genomes]
rs16839881	0.82[EUR][1000 genomes]
rs16839884	0.82[EUR][1000 genomes]
rs16839886	0.82[EUR][1000 genomes]
rs16839905	0.88[EUR][1000 genomes]
rs16839906	0.87[EUR][1000 genomes]
rs16839910	0.88[EUR][1000 genomes]
rs16839919	0.92[EUR][1000 genomes]
rs2335907	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4294368	0.89[EUR][1000 genomes]
rs4316314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4405100	0.92[EUR][1000 genomes]
rs4518841	0.89[EUR][1000 genomes]
rs4562566	0.89[EUR][1000 genomes]
rs4601531	0.89[EUR][1000 genomes]
rs4614205	0.85[EUR][1000 genomes]
rs4633231	0.89[EUR][1000 genomes]
rs4658042	0.86[EUR][1000 genomes]
rs4658043	0.86[EUR][1000 genomes]
rs6670223	0.90[EUR][1000 genomes]
rs6675592	0.90[EUR][1000 genomes]
rs6688468	0.89[EUR][1000 genomes]
rs6702610	0.97[EUR][1000 genomes]
rs7531491	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7541165	0.95[EUR][1000 genomes]
rs7544266	0.93[EUR][1000 genomes]
rs7547724	0.85[AFR][1000 genomes]
rs7552170	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196436400-196485200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:196466000-196480800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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