Variant report

Variant	rs7547724
Chromosome Location	chr1:196451988-196451989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:196448856..196453298-chr1:196454594..196458706,6	K562	blood:
2	chr1:196448595..196456381-chr1:196458214..196462920,9	K562	blood:
3	chr1:196450695..196453991-chr1:196455427..196457877,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10754193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10922064	1.00[GIH][hapmap]
rs10922065	1.00[GIH][hapmap]
rs10922081	0.85[YRI][hapmap]
rs12075206	1.00[GIH][hapmap]
rs12117379	0.87[EUR][1000 genomes]
rs12121401	1.00[ASN][1000 genomes]
rs12128003	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12128544	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12133639	1.00[EUR][1000 genomes]
rs12136798	1.00[EUR][1000 genomes]
rs12144706	1.00[EUR][1000 genomes]
rs12239898	1.00[EUR][1000 genomes]
rs13375443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13375567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs1339951	0.81[LWK][hapmap];0.84[MKK][hapmap];0.89[YRI][hapmap]
rs1416966	0.89[YRI][hapmap]
rs1416970	0.89[YRI][hapmap]
rs1416971	0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs2183225	1.00[CEU][hapmap]
rs2335906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs2335907	0.89[YRI][hapmap]
rs28620995	1.00[EUR][1000 genomes]
rs4314834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4316314	0.82[YRI][hapmap]
rs4507960	1.00[CEU][hapmap];0.81[GIH][hapmap]
rs4515738	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs4625226	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4658040	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs487114	1.00[CEU][hapmap]
rs499807	1.00[CEU][hapmap]
rs512900	1.00[CEU][hapmap]
rs58257510	1.00[EUR][1000 genomes]
rs6663649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs6680722	0.85[AFR][1000 genomes]
rs6680890	1.00[EUR][1000 genomes]
rs73069765	1.00[EUR][1000 genomes]
rs73069770	1.00[EUR][1000 genomes]
rs7531491	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7533533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7540922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7551203	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196420000-196460800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:196434200-196459200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:196434600-196459600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:196436400-196485200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:196437400-196467800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:196447400-196458200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:196447800-196468000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:196448400-196457600	Weak transcription	Fetal Kidney	kidney
9	chr1:196448800-196452200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:196450000-196459800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr1:196450200-196452800	Strong transcription	Liver	Liver
12	chr1:196450600-196462200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:196451200-196462200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:196451400-196467600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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