Variant report

Variant	rs6681267
Chromosome Location	chr1:76054107-76054108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12239249	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12239345	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12239378	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12239439	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332789	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1332790	0.81[ASN][1000 genomes]
rs1332791	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs211678	0.85[ASN][1000 genomes]
rs211679	0.85[ASN][1000 genomes]
rs6672008	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72973940	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv3445096	chr1:75933216-76126980	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2757737	chr1:75986904-76187748	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758943	chr1:75986904-76187748	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76049600-76054600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:76049800-76054600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:76051200-76054800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:76052400-76055200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:76053600-76054200	Enhancers	Fetal Brain Male	brain
6	chr1:76053600-76054800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:76053600-76060400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:76053800-76054800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:76053800-76054800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:76053800-76055200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:76053800-76055400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:76053800-76055400	Weak transcription	Gastric	stomach
13	chr1:76053800-76055400	Weak transcription	Pancreas	Pancrea
14	chr1:76054000-76054400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr1:76054000-76054400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr1:76054000-76054800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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