Variant report
| Variant | rs1332791 |
|---|---|
| Chromosome Location | chr1:76067894-76067895 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:76066835..76069254-chr1:76079406..76081859,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11804097 | 0.84[CHB][hapmap] |
| rs12239249 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12239345 | 0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12239378 | 0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12239439 | 0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1249796 | 0.84[CHB][hapmap] |
| rs1249797 | 0.84[CHB][hapmap] |
| rs1332784 | 0.92[CHB][hapmap] |
| rs1332789 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1332790 | 0.84[ASN][1000 genomes] |
| rs1443846 | 0.84[CHB][hapmap] |
| rs17097049 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap] |
| rs17303921 | 0.92[CHB][hapmap];0.82[CHD][hapmap] |
| rs1778454 | 0.84[CHB][hapmap] |
| rs211678 | 0.82[ASN][1000 genomes] |
| rs211679 | 0.82[ASN][1000 genomes] |
| rs211762 | 0.84[CHB][hapmap] |
| rs2347217 | 0.91[CHB][hapmap] |
| rs6672008 | 0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6681267 | 0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72973940 | 0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv519329 | chr1:75830438-76358591 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 2 | esv3445096 | chr1:75933216-76126980 | Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | esv2757737 | chr1:75986904-76187748 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | esv2758943 | chr1:75986904-76187748 | Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:76067200-76068000 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
