Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76032378..76034524-chr1:76036114..76037930,2	K562	blood:
2	chr1:76020704..76023494-chr1:76034910..76036939,2	K562	blood:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11578532	0.81[CEU][hapmap]
rs12239249	0.80[ASN][1000 genomes]
rs12239345	0.80[ASN][1000 genomes]
rs12239378	0.80[ASN][1000 genomes]
rs12239439	0.80[ASN][1000 genomes]
rs1249794	0.85[CHB][hapmap]
rs1332790	0.89[ASN][1000 genomes]
rs1332791	0.92[CHB][hapmap]
rs1443845	0.81[CEU][hapmap]
rs1571983	0.86[JPT][hapmap]
rs17097049	0.92[CHB][hapmap]
rs17303788	0.81[CEU][hapmap]
rs17303921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs182411	0.91[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.83[ASN][1000 genomes]
rs211683	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs211759	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs211762	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs211786	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs2779490	0.81[CEU][hapmap]
rs377233	0.81[ASN][1000 genomes]
rs396106	0.85[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs398851	0.81[ASN][1000 genomes]
rs409544	0.81[ASN][1000 genomes]
rs434424	0.81[ASN][1000 genomes]
rs438611	0.85[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs645742	0.81[ASN][1000 genomes]
rs6672008	0.83[ASN][1000 genomes]
rs6681267	0.80[ASN][1000 genomes]
rs72973940	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv3445096	chr1:75933216-76126980	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2757737	chr1:75986904-76187748	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758943	chr1:75986904-76187748	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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