Variant report

Variant	rs1571983
Chromosome Location	chr1:75982426-75982427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11163461	0.93[CHB][hapmap];0.81[MKK][hapmap]
rs11163490	0.93[CHB][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11163493	0.93[CHB][hapmap];0.80[CHD][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11163496	0.93[CHB][hapmap];0.93[YRI][hapmap]
rs11804097	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs12402118	0.86[JPT][hapmap]
rs1249794	0.86[JPT][hapmap]
rs1332784	0.86[JPT][hapmap]
rs1343520	0.81[CHB][hapmap]
rs17303921	0.86[JPT][hapmap]
rs1778459	0.84[JPT][hapmap]
rs211759	0.86[JPT][hapmap]
rs211762	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs211786	0.94[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv3445096	chr1:75933216-76126980	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1571983	ACADM	cis	cerebellum	SCAN
rs1571983	IFI44	cis	parietal	SCAN
rs1571983	CYP26A1	trans	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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