Variant report
Variant | rs11163496 |
---|---|
Chromosome Location | chr1:75960165-75960166 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:75959031..75961089-chr1:75965586..75967160,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11163461 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs11163490 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11163493 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11804097 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11806471 | 0.83[JPT][hapmap] |
rs11809429 | 0.83[JPT][hapmap] |
rs1249783 | 0.83[JPT][hapmap] |
rs1249796 | 0.83[JPT][hapmap] |
rs1249797 | 0.82[JPT][hapmap] |
rs1249807 | 0.82[JPT][hapmap] |
rs1443846 | 0.83[JPT][hapmap] |
rs1571983 | 0.93[CHB][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes] |
rs17096860 | 0.85[CHB][hapmap];0.81[JPT][hapmap] |
rs17096877 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
rs17584530 | 0.83[JPT][hapmap] |
rs1778454 | 0.83[JPT][hapmap] |
rs2083868 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
rs211786 | 0.85[CHB][hapmap];0.86[YRI][hapmap];0.87[ASN][1000 genomes] |
rs3845363 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
rs55812013 | 0.80[ASN][1000 genomes] |
rs56017446 | 0.80[ASN][1000 genomes] |
rs6657734 | 0.83[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv519329 | chr1:75830438-76358591 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
2 | esv3445096 | chr1:75933216-76126980 | Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No data |