Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:75939435..75941106-chr1:75956675..75959314,2	K562	blood:
2	chr1:75913816..75916653-chr1:75939102..75941877,2	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11163461	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs11163490	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11163493	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11163496	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11806471	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs11809429	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1249783	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1249796	0.83[JPT][hapmap]
rs1249797	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs1249807	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs1332791	0.84[CHB][hapmap]
rs1443846	0.84[JPT][hapmap]
rs1571983	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs17096860	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs17096877	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs17097049	0.84[CHB][hapmap]
rs17584530	0.84[JPT][hapmap]
rs1778454	0.84[JPT][hapmap]
rs2083868	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs211762	0.84[CHB][hapmap]
rs211786	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs2347217	0.83[CHB][hapmap]
rs3845363	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs6657734	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs6676696	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv3445096	chr1:75933216-76126980	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv947185	chr1:75939191-75952014	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75938000-75941000	Enhancers	HUVEC	blood vessel
2	chr1:75939400-75941000	Weak transcription	K562	blood

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