Variant report

Variant	rs11163461
Chromosome Location	chr1:75941966-75941967
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10465738	0.80[TSI][hapmap]
rs11163490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163494	0.80[TSI][hapmap]
rs11163496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11804097	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11806471	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs11809429	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs12088462	0.80[TSI][hapmap]
rs1249783	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1249796	0.82[JPT][hapmap]
rs1249797	0.89[CHD][hapmap];0.82[JPT][hapmap]
rs1249807	0.89[CHD][hapmap];0.82[JPT][hapmap]
rs1412715	0.80[TSI][hapmap]
rs1443846	0.82[JPT][hapmap]
rs1571983	0.93[CHB][hapmap];0.81[MKK][hapmap];0.83[ASN][1000 genomes]
rs17096860	0.85[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap]
rs17096877	0.85[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap]
rs17584530	0.82[JPT][hapmap]
rs1778454	0.82[JPT][hapmap]
rs1999493	0.80[TSI][hapmap]
rs2083868	0.85[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap]
rs211786	0.85[CHB][hapmap];0.85[CHD][hapmap];0.83[ASN][1000 genomes]
rs211787	0.80[TSI][hapmap]
rs2347217	0.82[CHB][hapmap]
rs3845363	0.85[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap]
rs4598448	0.80[TSI][hapmap]
rs6657734	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs6676696	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv3445096	chr1:75933216-76126980	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv947185	chr1:75939191-75952014	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11163461	ACADM	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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