Variant report

Variant	rs6681355
Chromosome Location	chr1:210067972-210067973
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1883725	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2143545	0.89[EUR][1000 genomes]
rs2206700	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6674507	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6675416	0.81[EUR][1000 genomes]
rs6677876	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7511737	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210060600-210068200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210064400-210068200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:210064400-210068800	Weak transcription	HSMM	muscle
4	chr1:210064600-210068200	Weak transcription	HUVEC	blood vessel
5	chr1:210065200-210068000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:210065200-210068000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:210065200-210068000	Weak transcription	NH-A	brain
8	chr1:210065200-210068200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:210065200-210068200	Weak transcription	Osteobl	bone
10	chr1:210065400-210068000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:210066200-210068800	Enhancers	Hela-S3	cervix
12	chr1:210066600-210070800	Enhancers	NHEK	skin
13	chr1:210066800-210070800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:210066800-210070800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr1:210067000-210068400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:210067200-210068000	Weak transcription	Primary T cells from cord blood	blood
17	chr1:210067200-210068200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:210067200-210068200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:210067200-210069000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:210067200-210069600	Weak transcription	HSMMtube	muscle
21	chr1:210067400-210069600	Weak transcription	NHDF-Ad	bronchial
22	chr1:210067600-210071000	Enhancers	HMEC	breast
23	chr1:210067800-210071000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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