Variant report

Variant	rs7511737
Chromosome Location	chr1:210059050-210059051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210057678..210059347-chr1:210545335..210547979,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1883725	0.85[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2143545	0.87[EUR][1000 genomes]
rs2206700	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6674507	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6675416	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6677876	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6681355	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210055600-210060400	Enhancers	HSMMtube	muscle
2	chr1:210055800-210060000	Weak transcription	Pancreas	Pancrea
3	chr1:210055800-210060200	Enhancers	HSMM	muscle
4	chr1:210056200-210060400	Enhancers	NHEK	skin
5	chr1:210056400-210059400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:210056400-210059800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:210056400-210060400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:210056400-210060400	Enhancers	HMEC	breast
9	chr1:210056600-210060000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:210056600-210060200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:210056800-210059400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:210057000-210059200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr1:210057200-210059800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr1:210058000-210059200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:210058000-210059400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr1:210058000-210059800	Enhancers	NHDF-Ad	bronchial
17	chr1:210058000-210061200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:210058000-210064000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:210058200-210059200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:210058200-210059400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:210058200-210059800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:210058200-210060200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr1:210058200-210060200	Enhancers	NH-A	brain
24	chr1:210058200-210060600	Enhancers	Hela-S3	cervix
25	chr1:210058400-210059600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr1:210058400-210061600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr1:210058600-210059200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:210058600-210060400	Enhancers	Osteobl	bone
29	chr1:210058600-210063200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr1:210058800-210059200	Weak transcription	Brain Hippocampus Middle	brain
31	chr1:210058800-210064000	Weak transcription	HUVEC	blood vessel
32	chr1:210059000-210060400	Enhancers	Placenta Amnion	Placenta Amnion

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