Variant report

Variant	rs6681360
Chromosome Location	chr1:221337585-221337586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1414514	1.00[AMR][1000 genomes]
rs57205215	1.00[AMR][1000 genomes]
rs57313937	1.00[AMR][1000 genomes]
rs57334435	1.00[AMR][1000 genomes]
rs6656596	1.00[YRI][hapmap]
rs6668045	1.00[AFR][1000 genomes]
rs6672121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6688957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6694121	1.00[YRI][hapmap]
rs6696283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7521354	1.00[AFR][1000 genomes]
rs7548183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221329400-221342600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:221334400-221339800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:221334400-221339800	Enhancers	HUVEC	blood vessel
4	chr1:221334400-221340800	Enhancers	NHDF-Ad	bronchial
5	chr1:221334600-221338000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:221334800-221339600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr1:221335800-221338200	Weak transcription	Spleen	Spleen
8	chr1:221336000-221339000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr1:221336000-221339400	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:221336000-221339600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr1:221336000-221341000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:221336000-221342600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:221336200-221338200	Weak transcription	Adipose Nuclei	Adipose
14	chr1:221336400-221337600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr1:221336600-221337600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:221336600-221339200	Weak transcription	Psoas Muscle	Psoas
17	chr1:221336600-221340800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr1:221336600-221341600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr1:221336600-221342600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr1:221336600-221343000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr1:221336800-221342600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:221337000-221337600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr1:221337000-221337600	Enhancers	Osteobl	bone
24	chr1:221337000-221337800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr1:221337000-221342400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr1:221337200-221337600	Enhancers	NHLF	lung
27	chr1:221337200-221340600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr1:221337400-221337600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:221337400-221337800	Bivalent Enhancer	Primary B cells from cord blood	blood
30	chr1:221337400-221340600	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr1:221337400-221342600	Enhancers	Primary monocytes fromperipheralblood	blood

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