Variant report

Variant	rs6688957
Chromosome Location	chr1:221334359-221334360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1414514	1.00[AMR][1000 genomes]
rs57205215	1.00[AMR][1000 genomes]
rs57313937	1.00[AMR][1000 genomes]
rs57334435	1.00[AMR][1000 genomes]
rs6668045	1.00[AFR][1000 genomes]
rs6672121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6681360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6696283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7521354	1.00[AFR][1000 genomes]
rs7548183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221329400-221342600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:221331200-221334800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:221331600-221335000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:221332000-221334600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:221332000-221334800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:221332400-221334400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr1:221332600-221334400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr1:221333400-221334800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:221333400-221334800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:221333400-221335800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:221333600-221334800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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