Variant report

Variant	rs6681961
Chromosome Location	chr1:154470360-154470361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4240873	0.92[AFR][1000 genomes]
rs4393148	0.93[AFR][1000 genomes]
rs4845632	0.95[AFR][1000 genomes]
rs4845646	0.93[AFR][1000 genomes]
rs6427694	0.84[AFR][1000 genomes]
rs6678164	0.93[AFR][1000 genomes]
rs6683078	0.97[AFR][1000 genomes]
rs6684225	0.94[AFR][1000 genomes]
rs7530737	0.88[AFR][1000 genomes]
rs7539745	0.81[AFR][1000 genomes]
rs9659545	0.94[AFR][1000 genomes]
rs9728545	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	esv1815481	chr1:154465065-154475033	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154461800-154473800	Weak transcription	Pancreas	Pancrea
2	chr1:154464000-154472400	Weak transcription	Lung	lung
3	chr1:154466400-154471600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:154466600-154471200	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:154467400-154470400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr1:154467600-154470600	Enhancers	Primary B cells from cord blood	blood
7	chr1:154467600-154470600	Enhancers	Primary B cells from peripheral blood	blood
8	chr1:154467800-154470400	Enhancers	Primary hematopoietic stem cells	blood
9	chr1:154467800-154470600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:154467800-154470600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:154467800-154470600	Enhancers	Liver	Liver
12	chr1:154468200-154471600	Weak transcription	Right Ventricle	heart
13	chr1:154468800-154470400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr1:154469000-154470400	Enhancers	Fetal Thymus	thymus
15	chr1:154469000-154470400	Enhancers	Left Ventricle	heart
16	chr1:154469200-154471200	Weak transcription	Right Atrium	heart
17	chr1:154469800-154471600	Weak transcription	Adipose Nuclei	Adipose
18	chr1:154469800-154472000	Weak transcription	Spleen	Spleen
19	chr1:154470200-154471200	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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