Variant report

Variant	rs9728545
Chromosome Location	chr1:154460663-154460664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154457376..154460470-chr1:154460552..154464074,4	K562	blood:
2	chr1:154457376..154460470-chr1:154460552..154464074,3	K562	blood:

Variant related genes	Relation type
ENSG00000169291	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11265623	0.81[AFR][1000 genomes]
rs4240873	0.91[AFR][1000 genomes]
rs4393148	0.98[AFR][1000 genomes]
rs4474240	0.81[AFR][1000 genomes]
rs4845632	1.00[AFR][1000 genomes]
rs4845646	0.92[AFR][1000 genomes]
rs6427694	0.81[AFR][1000 genomes]
rs6678164	0.94[AFR][1000 genomes]
rs6681961	0.95[AFR][1000 genomes]
rs6683078	0.94[AFR][1000 genomes]
rs6684225	0.93[AFR][1000 genomes]
rs7530737	0.87[AFR][1000 genomes]
rs7539745	0.80[AFR][1000 genomes]
rs9659545	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154427800-154464800	Weak transcription	Ovary	ovary
2	chr1:154438400-154463400	Weak transcription	Esophagus	oesophagus
3	chr1:154441600-154465200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:154443000-154464400	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:154450000-154462400	Weak transcription	Colonic Mucosa	Colon
6	chr1:154451600-154465600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:154454000-154461800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:154455200-154461600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:154458000-154462000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:154458600-154462400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:154458600-154463000	Weak transcription	Psoas Muscle	Psoas
12	chr1:154458600-154469000	Weak transcription	Small Intestine	intestine
13	chr1:154458800-154462200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:154459000-154462000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:154459200-154461400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:154459200-154461400	Weak transcription	Right Atrium	heart
17	chr1:154459200-154461400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:154459200-154461600	Weak transcription	Fetal Lung	lung
19	chr1:154459200-154461800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr1:154459200-154463000	Weak transcription	Left Ventricle	heart
21	chr1:154459200-154463000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr1:154459200-154463600	Weak transcription	Right Ventricle	heart
23	chr1:154459200-154464800	Weak transcription	Brain Anterior Caudate	brain
24	chr1:154459400-154464200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr1:154459400-154465600	Weak transcription	Liver	Liver
26	chr1:154459600-154462400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:154459800-154461400	Weak transcription	Fetal Stomach	stomach
28	chr1:154459800-154462400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:154459800-154464200	Weak transcription	Placenta	Placenta
30	chr1:154460000-154462000	Genic enhancers	Lung	lung
31	chr1:154460000-154464200	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr1:154460200-154461200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr1:154460200-154461400	Strong transcription	Adipose Nuclei	Adipose
34	chr1:154460200-154461400	Weak transcription	Spleen	Spleen
35	chr1:154460200-154461400	Weak transcription	HUVEC	blood vessel
36	chr1:154460200-154461800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr1:154460200-154461800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr1:154460200-154462600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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