Variant report

Variant	rs66835003
Chromosome Location	chr10:90924218-90924219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10887919	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203005	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596487	0.87[AFR][1000 genomes]
rs12261436	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772500	1.00[ASN][1000 genomes]
rs7089138	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv895881	chr10:90842431-90940003	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv551845	chr10:90919135-90964026	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90919400-90925800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:90919600-90931400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:90923000-90924400	Enhancers	Duodenum Mucosa	Duodenum
4	chr10:90923000-90924400	Flanking Active TSS	GM12878-XiMat	blood
5	chr10:90923000-90925200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:90923200-90924400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:90923400-90924400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:90923400-90924400	Enhancers	Placenta	Placenta
9	chr10:90923600-90924400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:90923600-90924400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr10:90923600-90924800	Weak transcription	Esophagus	oesophagus
12	chr10:90923800-90924400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr10:90923800-90924400	Enhancers	Liver	Liver
14	chr10:90923800-90924400	Enhancers	Small Intestine	intestine
15	chr10:90923800-90924600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr10:90923800-90925000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr10:90923800-90925400	Weak transcription	NHEK	skin
18	chr10:90923800-90932000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:90924000-90924400	Enhancers	Primary B cells from peripheral blood	blood
20	chr10:90924000-90924400	Enhancers	Primary T cells fromperipheralblood	blood
21	chr10:90924000-90924400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:90924000-90924400	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr10:90924000-90924400	Enhancers	Spleen	Spleen
24	chr10:90924000-90924600	Enhancers	Primary B cells from cord blood	blood
25	chr10:90924000-90924800	Enhancers	Primary T cells from cord blood	blood
26	chr10:90924000-90924800	Enhancers	Primary hematopoietic stem cells	blood
27	chr10:90924000-90924800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:90924000-90924800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:90924000-90925000	Enhancers	Fetal Thymus	thymus
30	chr10:90924000-90925400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:90924000-90931400	Weak transcription	HMEC	breast
32	chr10:90924000-90931800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:90924000-90931800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:90924200-90924400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:90924200-90924600	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr10:90924200-90924600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr10:90924200-90924600	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr10:90924200-90925000	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr10:90924200-90925400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr10:90924200-90927200	Weak transcription	Adipose Nuclei	Adipose
41	chr10:90924200-90931600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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