Variant report

Variant	rs7089138
Chromosome Location	chr10:90970034-90970035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90790531..90793137-chr10:90969474..90972044,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17382301	1.00[ASN][1000 genomes]
rs34419176	1.00[ASN][1000 genomes]
rs35104206	1.00[ASN][1000 genomes]
rs4933497	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66835003	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
6	nsv517170	chr10:90931602-90975207	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv467422	chr10:90940687-90975207	Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv467423	chr10:90940687-90975207	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv551858	chr10:90940687-90975207	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1038123	chr10:90954417-90992129	Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1040280	chr10:90962032-90979093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1042428	chr10:90962252-90977164	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90967600-90987200	Weak transcription	Aorta	Aorta
2	chr10:90968200-90970800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:90968200-90971000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:90968200-90973200	Weak transcription	Brain Angular Gyrus	brain
5	chr10:90968200-90974000	Weak transcription	HMEC	breast
6	chr10:90968200-90974600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:90968200-90974600	Weak transcription	Spleen	Spleen
8	chr10:90968200-90977000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:90968200-90977000	Weak transcription	HSMM	muscle
10	chr10:90968200-90979800	Weak transcription	Ovary	ovary
11	chr10:90968200-90983400	Weak transcription	NHLF	lung
12	chr10:90968200-90994800	Weak transcription	Gastric	stomach
13	chr10:90968400-90970800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:90968400-90971000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:90968400-90973200	Weak transcription	Brain Anterior Caudate	brain
16	chr10:90968400-90973200	Weak transcription	Brain Substantia Nigra	brain
17	chr10:90968400-90973400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:90968400-90973400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:90968400-90974000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:90968400-90974600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:90968400-90974600	Weak transcription	Osteobl	bone
22	chr10:90968400-90975200	Weak transcription	NHEK	skin
23	chr10:90968400-90979400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:90968400-90979400	Weak transcription	Esophagus	oesophagus
25	chr10:90968400-90979400	Weak transcription	Lung	lung
26	chr10:90968400-90979600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:90968400-90987200	Weak transcription	Pancreas	Pancrea
28	chr10:90968400-91000800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:90968400-91002200	Weak transcription	Right Ventricle	heart
30	chr10:90968600-90973000	Weak transcription	Adipose Nuclei	Adipose
31	chr10:90968600-90973200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:90968600-90973600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:90968600-90973600	Weak transcription	Liver	Liver
34	chr10:90968600-90977000	Weak transcription	HUVEC	blood vessel
35	chr10:90968800-90973200	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:90968800-90974600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr10:90969000-90977000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:90969600-90977000	Weak transcription	Fetal Thymus	thymus
39	chr10:90969800-90970200	Enhancers	GM12878-XiMat	blood

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