Variant report

Variant	rs6684251
Chromosome Location	chr1:158415057-158415058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1418840	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16840136	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16840139	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16840141	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16840143	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16840182	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16840184	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2023633	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2213945	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2220631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2860016	1.00[AMR][1000 genomes]
rs28866916	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55702828	1.00[AMR][1000 genomes]
rs56773217	1.00[AMR][1000 genomes]
rs58592764	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59604063	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691971	1.00[AMR][1000 genomes]
rs73012005	1.00[AMR][1000 genomes]
rs73013915	1.00[AMR][1000 genomes]
rs73013919	1.00[AMR][1000 genomes]
rs73013923	1.00[AMR][1000 genomes]
rs73013934	1.00[AMR][1000 genomes]
rs73013940	1.00[AMR][1000 genomes]
rs73015825	1.00[AMR][1000 genomes]
rs73017709	1.00[AMR][1000 genomes]
rs73017717	1.00[AMR][1000 genomes]
rs73017739	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019705	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019756	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021774	0.88[AFR][1000 genomes]
rs73023804	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023822	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023829	1.00[AMR][1000 genomes]
rs73023942	1.00[AMR][1000 genomes]
rs73023945	1.00[AMR][1000 genomes]
rs73023947	1.00[AMR][1000 genomes]
rs73025843	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027731	1.00[AMR][1000 genomes]
rs73027744	1.00[AMR][1000 genomes]
rs74121843	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121844	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121858	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7532088	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv998569	chr1:158317392-158443389	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158414800-158415200	Enhancers	Fetal Thymus	thymus
2	chr1:158415000-158415400	Genic enhancers	Thymus	Thymus
3	chr1:158415000-158415800	Flanking Active TSS	Dnd41	blood

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