Variant report

Variant	rs73023942
Chromosome Location	chr1:158259229-158259230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1418840	1.00[AMR][1000 genomes]
rs16840136	1.00[AMR][1000 genomes]
rs16840139	1.00[AMR][1000 genomes]
rs16840141	1.00[AMR][1000 genomes]
rs16840143	1.00[AMR][1000 genomes]
rs16840182	1.00[AMR][1000 genomes]
rs2023633	1.00[AMR][1000 genomes]
rs2213945	1.00[AMR][1000 genomes]
rs2220631	1.00[AMR][1000 genomes]
rs2317881	1.00[AMR][1000 genomes]
rs2860016	1.00[AMR][1000 genomes]
rs28866916	1.00[AMR][1000 genomes]
rs56773217	1.00[AMR][1000 genomes]
rs58201896	1.00[AMR][1000 genomes]
rs58592764	1.00[AMR][1000 genomes]
rs59604063	1.00[AMR][1000 genomes]
rs60150627	1.00[AMR][1000 genomes]
rs6684251	1.00[AMR][1000 genomes]
rs73012005	1.00[AMR][1000 genomes]
rs73013915	1.00[AMR][1000 genomes]
rs73013919	1.00[AMR][1000 genomes]
rs73013923	1.00[AMR][1000 genomes]
rs73013934	1.00[AMR][1000 genomes]
rs73013940	1.00[AMR][1000 genomes]
rs73014155	1.00[AMR][1000 genomes]
rs73015825	1.00[AMR][1000 genomes]
rs73017709	1.00[AMR][1000 genomes]
rs73017717	1.00[AMR][1000 genomes]
rs73017739	1.00[AMR][1000 genomes]
rs73019705	1.00[AMR][1000 genomes]
rs73019756	1.00[AMR][1000 genomes]
rs73021906	1.00[AMR][1000 genomes]
rs73021929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023804	1.00[AMR][1000 genomes]
rs73023822	1.00[AMR][1000 genomes]
rs73023829	1.00[AMR][1000 genomes]
rs73023945	1.00[AMR][1000 genomes]
rs73023947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121843	1.00[AMR][1000 genomes]
rs74121844	1.00[AMR][1000 genomes]
rs74121858	1.00[AMR][1000 genomes]
rs7532088	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158253800-158262600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:158255600-158259400	Enhancers	Thymus	Thymus
3	chr1:158255800-158259600	Weak transcription	Spleen	Spleen
4	chr1:158256800-158259400	Enhancers	Primary B cells from peripheral blood	blood
5	chr1:158257200-158259400	Enhancers	Primary B cells from cord blood	blood
6	chr1:158257200-158259400	Enhancers	GM12878-XiMat	blood
7	chr1:158257200-158259600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:158257200-158264000	Enhancers	Dnd41	blood
9	chr1:158257600-158259600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:158257800-158259400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr1:158259000-158259400	Active TSS	Fetal Thymus	thymus
12	chr1:158259000-158261400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr1:158259200-158262600	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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