Variant report

Variant	rs66871510
Chromosome Location	chr1:47270673-47270674
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr1:47270560-47271036	ECC-1	luminal epithelium:	n/a	n/a
2	GATA3	chr1:47269914-47270772	MCF-7	breast:	n/a	n/a
3	NR3C1	chr1:47270577-47270973	ECC-1	luminal epithelium:	n/a	n/a
4	NFIC	chr1:47270535-47271104	ECC-1	luminal epithelium:	n/a	n/a
5	STAT3	chr1:47270665-47270674	MCF10A-Er-Src	breast:	n/a	n/a
6	NFIC	chr1:47270453-47271070	ECC-1	luminal epithelium:	n/a	n/a
7	NR3C1	chr1:47270594-47270949	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
CYP4B1	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11211362	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11211370	0.81[ASN][1000 genomes]
rs11211375	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11211376	0.81[ASN][1000 genomes]
rs11211377	0.88[ASN][1000 genomes]
rs12044524	0.86[EUR][1000 genomes]
rs12135031	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12142787	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733133	0.93[ASN][1000 genomes]
rs12742610	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12758361	0.85[EUR][1000 genomes]
rs2297809	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2297810	0.87[ASN][1000 genomes]
rs2297811	0.92[ASN][1000 genomes]
rs2297813	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35191195	0.93[ASN][1000 genomes]
rs35947953	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3766194	0.93[ASN][1000 genomes]
rs3766208	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3766209	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4646480	0.84[AMR][1000 genomes]
rs4646481	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4646483	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4646484	0.86[ASN][1000 genomes]
rs4646491	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6658037	0.86[ASN][1000 genomes]
rs6700251	0.85[ASN][1000 genomes]
rs72681937	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7535312	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001455	chr1:46828004-47326539	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv534950	chr1:46828004-47326539	Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1013048	chr1:47132831-47377364	Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv534955	chr1:47132831-47377364	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1011086	chr1:47259078-47305191	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv870792	chr1:47259138-47272185	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv870538	chr1:47259138-47309265	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1010063	chr1:47264205-47285118	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv546165	chr1:47266590-47272785	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs66871510	CYP4B1	cis	lung	GTEx

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47265400-47271400	Weak transcription	Fetal Intestine Small	intestine
2	chr1:47265600-47271800	Weak transcription	Spleen	Spleen
3	chr1:47265600-47279200	Weak transcription	Gastric	stomach
4	chr1:47266400-47273800	Enhancers	Placenta	Placenta
5	chr1:47266800-47271600	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:47267800-47273000	Enhancers	Esophagus	oesophagus
7	chr1:47267800-47273600	Enhancers	Lung	lung
8	chr1:47268000-47271600	Weak transcription	Fetal Intestine Large	intestine
9	chr1:47268400-47273600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:47268600-47271200	Enhancers	Right Ventricle	heart
11	chr1:47269600-47271000	Enhancers	Stomach Mucosa	stomach
12	chr1:47269600-47271200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr1:47269800-47270800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:47269800-47271000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:47269800-47271200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr1:47269800-47271600	Enhancers	Right Atrium	heart
17	chr1:47269800-47271800	Enhancers	Stomach Smooth Muscle	stomach
18	chr1:47269800-47272400	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr1:47269800-47273600	Enhancers	Left Ventricle	heart
20	chr1:47270000-47271600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr1:47270400-47271400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr1:47270600-47270800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:47270600-47271000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:47270600-47273600	Enhancers	Skeletal Muscle Female	skeletal muscle

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