Variant report

Variant	rs6687929
Chromosome Location	chr1:158007863-158007864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12118455	0.96[AFR][1000 genomes]
rs12568166	0.91[YRI][hapmap];0.96[AFR][1000 genomes]
rs57434777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59530587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6679187	1.00[EUR][1000 genomes]
rs6688137	0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6691777	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6692314	0.96[AFR][1000 genomes]
rs6699860	0.93[AFR][1000 genomes]
rs73020621	1.00[EUR][1000 genomes]
rs73022620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823720	chr1:157978556-158034017	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:157997600-158047600	Weak transcription	Dnd41	blood
2	chr1:157999000-158013000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:158001200-158011800	Weak transcription	Fetal Intestine Large	intestine
4	chr1:158001200-158047400	Weak transcription	Thymus	Thymus
5	chr1:158002400-158025400	Weak transcription	Fetal Brain Female	brain
6	chr1:158004800-158009400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:158005000-158009000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:158005000-158009400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:158005000-158009600	Enhancers	Ovary	ovary
10	chr1:158005000-158010000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:158005000-158010200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:158005200-158008400	Genic enhancers	NHEK	skin
13	chr1:158005400-158009600	Enhancers	Adipose Nuclei	Adipose
14	chr1:158005600-158008200	Enhancers	A549	lung
15	chr1:158005800-158009600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:158006000-158008600	Genic enhancers	HSMM	muscle
17	chr1:158006200-158009200	Genic enhancers	Fetal Stomach	stomach
18	chr1:158006200-158009400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:158006200-158009400	Weak transcription	Stomach Mucosa	stomach
20	chr1:158006200-158009600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:158006400-158008000	Strong transcription	Fetal Intestine Small	intestine
22	chr1:158006400-158008200	Enhancers	Placenta	Placenta
23	chr1:158006400-158009800	Enhancers	HMEC	breast
24	chr1:158006800-158009000	Enhancers	Fetal Muscle Trunk	muscle
25	chr1:158006800-158009400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:158007000-158010000	Enhancers	HUVEC	blood vessel
27	chr1:158007200-158008600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:158007200-158009400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr1:158007200-158009800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr1:158007200-158010000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr1:158007200-158010000	Enhancers	Fetal Lung	lung
32	chr1:158007400-158008000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr1:158007400-158008000	Enhancers	Colonic Mucosa	Colon
34	chr1:158007400-158008200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr1:158007400-158008200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr1:158007400-158008200	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr1:158007400-158008200	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr1:158007400-158008200	Enhancers	Lung	lung
39	chr1:158007400-158008200	Flanking Active TSS	Hela-S3	cervix
40	chr1:158007400-158008400	Enhancers	HSMMtube	muscle
41	chr1:158007400-158008800	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr1:158007400-158008800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr1:158007400-158008800	Enhancers	Aorta	Aorta
44	chr1:158007400-158008800	Enhancers	Fetal Muscle Leg	muscle
45	chr1:158007400-158009000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:158007400-158009200	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr1:158007400-158009200	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr1:158007400-158009200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr1:158007400-158009200	Enhancers	Rectal Smooth Muscle	rectum
50	chr1:158007400-158009400	Enhancers	H1 Cell Line	embryonic stem cell

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