Variant report

Variant	rs6699860
Chromosome Location	chr1:158006541-158006542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:157961892..157962558-chr1:158005788..158006668,2	MCF-7	breast:
2	chr1:158005662..158007794-chr1:158010533..158013028,2	K562	blood:
3	chr1:157998908..158001801-chr1:158002681..158007266,4	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10430456	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11264878	0.96[ASN][1000 genomes]
rs12025305	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12118340	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12118455	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12134949	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12568166	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16839617	0.91[AMR][1000 genomes]
rs16839627	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16839630	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16839636	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1972216	0.86[ASN][1000 genomes]
rs1980765	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4971181	0.86[ASN][1000 genomes]
rs4971182	0.86[ASN][1000 genomes]
rs4971183	0.86[ASN][1000 genomes]
rs4971184	0.86[ASN][1000 genomes]
rs57434777	0.93[AFR][1000 genomes]
rs6661149	0.86[ASN][1000 genomes]
rs6661160	0.86[ASN][1000 genomes]
rs6664509	0.86[ASN][1000 genomes]
rs6665788	0.96[ASN][1000 genomes]
rs6665898	0.96[ASN][1000 genomes]
rs6687929	0.93[AFR][1000 genomes]
rs6688137	0.90[AFR][1000 genomes]
rs6690504	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6691777	0.96[AFR][1000 genomes]
rs6692314	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7548850	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823720	chr1:157978556-158034017	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:157989400-158007400	Weak transcription	Gastric	stomach
2	chr1:157991800-158007400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:157993000-158007400	Weak transcription	HSMMtube	muscle
4	chr1:157993000-158007600	Weak transcription	Esophagus	oesophagus
5	chr1:157993200-158007400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:157995000-158007800	Weak transcription	Brain Germinal Matrix	brain
7	chr1:157995400-158007600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:157995800-158007400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:157996000-158007400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:157996000-158007400	Weak transcription	Lung	lung
11	chr1:157996200-158006800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:157996200-158007600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:157996200-158007600	Weak transcription	Spleen	Spleen
14	chr1:157996400-158007400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr1:157997600-158047600	Weak transcription	Dnd41	blood
16	chr1:157998000-158007400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr1:157998200-158007600	Weak transcription	Left Ventricle	heart
18	chr1:157999000-158013000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr1:158001200-158011800	Weak transcription	Fetal Intestine Large	intestine
20	chr1:158001200-158047400	Weak transcription	Thymus	Thymus
21	chr1:158001400-158007400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:158001400-158007400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr1:158001400-158007400	Weak transcription	Aorta	Aorta
24	chr1:158001600-158007400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr1:158002400-158025400	Weak transcription	Fetal Brain Female	brain
26	chr1:158002600-158007400	Weak transcription	Fetal Muscle Leg	muscle
27	chr1:158003400-158006600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr1:158004800-158007400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:158004800-158009400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr1:158005000-158006600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:158005000-158006600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:158005000-158006800	Genic enhancers	NHLF	lung
33	chr1:158005000-158007400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr1:158005000-158007400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr1:158005000-158009000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr1:158005000-158009400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:158005000-158009600	Enhancers	Ovary	ovary
38	chr1:158005000-158010000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:158005000-158010200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr1:158005200-158007800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr1:158005200-158008400	Genic enhancers	NHEK	skin
42	chr1:158005400-158007400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:158005400-158009600	Enhancers	Adipose Nuclei	Adipose
44	chr1:158005600-158006600	Enhancers	HUVEC	blood vessel
45	chr1:158005600-158008200	Enhancers	A549	lung
46	chr1:158005800-158006600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr1:158005800-158006600	Weak transcription	Fetal Lung	lung
48	chr1:158005800-158007400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:158005800-158007400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr1:158005800-158009600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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