The 2.0 version of rSNPBase

Variant report

Variant rs6664509
Chromosome Location chr1:157999237-157999238
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:157985200-158006000 Weak transcription Fetal Thymus thymus
2 chr1:157989400-158007400 Weak transcription Gastric stomach
3 chr1:157991400-158000400 Weak transcription Fetal Intestine Large intestine
4 chr1:157991800-158002200 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr1:157991800-158007400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr1:157992800-158000600 Weak transcription Thymus Thymus
7 chr1:157993000-158007400 Weak transcription HSMMtube muscle
8 chr1:157993000-158007600 Weak transcription Esophagus oesophagus
9 chr1:157993200-158007400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr1:157994400-157999600 Enhancers A549 lung
11 chr1:157995000-158007800 Weak transcription Brain Germinal Matrix brain
12 chr1:157995200-158004200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr1:157995400-157999400 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr1:157995400-158007600 Weak transcription H9 Cell Line embryonic stem cell
15 chr1:157995600-158000000 Weak transcription HUES48 Cell Line embryonic stem cell
16 chr1:157995600-158004400 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr1:157995800-158000200 Weak transcription Fetal Intestine Small intestine
18 chr1:157995800-158000600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr1:157995800-158001000 Weak transcription Fetal Brain Female brain
20 chr1:157995800-158005600 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr1:157995800-158007400 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr1:157996000-158000400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr1:157996000-158001000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr1:157996000-158007400 Weak transcription H1 Cell Line embryonic stem cell
25 chr1:157996000-158007400 Weak transcription Lung lung
26 chr1:157996200-158000000 Weak transcription NHDF-Ad bronchial
27 chr1:157996200-158000600 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr1:157996200-158000600 Weak transcription iPS-20b Cell Line embryonic stem cell
29 chr1:157996200-158006800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
30 chr1:157996200-158007600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:157996200-158007600 Weak transcription Spleen Spleen
32 chr1:157996400-158000400 Weak transcription Aorta Aorta
33 chr1:157996400-158001000 Weak transcription HUES6 Cell Line embryonic stem cell
34 chr1:157996400-158005600 Weak transcription iPS-15b Cell Line embryonic stem cell
35 chr1:157996400-158007400 Weak transcription Duodenum Mucosa Duodenum
36 chr1:157996600-158000600 Weak transcription Fetal Kidney kidney
37 chr1:157996800-158000000 Weak transcription Placenta Placenta
38 chr1:157996800-158000400 Weak transcription Fetal Lung lung
39 chr1:157996800-158001400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
40 chr1:157997000-158000200 Weak transcription Fetal Muscle Trunk muscle
41 chr1:157997000-158001800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr1:157997200-158000400 Genic enhancers NHEK skin
43 chr1:157997200-158000600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr1:157997200-158005600 Weak transcription Stomach Smooth Muscle stomach
45 chr1:157997400-158000600 Weak transcription Fetal Muscle Leg muscle
46 chr1:157997600-158000000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr1:157997600-158000200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr1:157997600-158000400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr1:157997600-158004800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
50 chr1:157997600-158047600 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015