Variant report

Variant	rs7548850
Chromosome Location	chr1:158005274-158005275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:157961376..157963058-chr1:158005272..158006485,12	MCF-7	breast:
2	chr1:157998908..158001801-chr1:158002681..158007266,4	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10430456	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11264878	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12025305	0.98[ASN][1000 genomes]
rs12118340	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12118455	0.98[ASN][1000 genomes]
rs12134949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12568166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16839617	0.81[JPT][hapmap]
rs16839627	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16839630	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16839636	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1925038	0.94[YRI][hapmap]
rs1972216	1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1980765	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4445460	0.93[YRI][hapmap]
rs4971174	0.97[YRI][hapmap];0.83[AFR][1000 genomes]
rs4971177	0.88[LWK][hapmap];0.93[YRI][hapmap]
rs4971179	0.81[JPT][hapmap];0.80[YRI][hapmap]
rs4971180	0.81[JPT][hapmap];0.81[YRI][hapmap]
rs4971181	0.89[ASN][1000 genomes]
rs4971182	0.89[ASN][1000 genomes]
rs4971183	1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[ASN][1000 genomes]
rs4971184	0.89[ASN][1000 genomes]
rs5018263	0.90[YRI][hapmap]
rs6661149	1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs6661160	0.89[ASN][1000 genomes]
rs6664509	0.89[ASN][1000 genomes]
rs6665788	1.00[ASN][1000 genomes]
rs6665898	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6666443	0.94[YRI][hapmap]
rs6680191	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6690504	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6692314	0.98[ASN][1000 genomes]
rs6699860	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823720	chr1:157978556-158034017	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:157985200-158006000	Weak transcription	Fetal Thymus	thymus
2	chr1:157989400-158007400	Weak transcription	Gastric	stomach
3	chr1:157991800-158007400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:157993000-158007400	Weak transcription	HSMMtube	muscle
5	chr1:157993000-158007600	Weak transcription	Esophagus	oesophagus
6	chr1:157993200-158007400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:157995000-158007800	Weak transcription	Brain Germinal Matrix	brain
8	chr1:157995400-158007600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:157995800-158005600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:157995800-158007400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr1:157996000-158007400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:157996000-158007400	Weak transcription	Lung	lung
13	chr1:157996200-158006800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:157996200-158007600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:157996200-158007600	Weak transcription	Spleen	Spleen
16	chr1:157996400-158005600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:157996400-158007400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr1:157997200-158005600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr1:157997600-158047600	Weak transcription	Dnd41	blood
20	chr1:157998000-158007400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr1:157998200-158007600	Weak transcription	Left Ventricle	heart
22	chr1:157999000-158006200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr1:157999000-158013000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr1:157999400-158005400	Weak transcription	Colon Smooth Muscle	Colon
25	chr1:157999400-158005400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr1:158001200-158011800	Weak transcription	Fetal Intestine Large	intestine
27	chr1:158001200-158047400	Weak transcription	Thymus	Thymus
28	chr1:158001400-158005600	Weak transcription	NH-A	brain
29	chr1:158001400-158005800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr1:158001400-158005800	Weak transcription	HSMM	muscle
31	chr1:158001400-158006000	Weak transcription	Fetal Kidney	kidney
32	chr1:158001400-158006400	Weak transcription	Placenta	Placenta
33	chr1:158001400-158007400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr1:158001400-158007400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr1:158001400-158007400	Weak transcription	Aorta	Aorta
36	chr1:158001600-158005400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:158001600-158005600	Weak transcription	HMEC	breast
38	chr1:158001600-158007400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr1:158001800-158005400	Weak transcription	Adipose Nuclei	Adipose
40	chr1:158001800-158005400	Weak transcription	A549	lung
41	chr1:158002000-158006400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr1:158002200-158005400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:158002200-158005400	Weak transcription	Hela-S3	cervix
44	chr1:158002200-158006200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr1:158002200-158006400	Weak transcription	Fetal Intestine Small	intestine
46	chr1:158002400-158005600	Weak transcription	HUVEC	blood vessel
47	chr1:158002400-158025400	Weak transcription	Fetal Brain Female	brain
48	chr1:158002600-158005400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr1:158002600-158007400	Weak transcription	Fetal Muscle Leg	muscle
50	chr1:158003400-158006600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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