Variant report

Variant	rs6689010
Chromosome Location	chr1:223667568-223667569
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10157965	0.91[EUR][1000 genomes]
rs11261292	0.91[EUR][1000 genomes]
rs11261293	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123913	0.91[EUR][1000 genomes]
rs12138605	0.96[EUR][1000 genomes]
rs12140078	0.94[EUR][1000 genomes]
rs12141379	0.96[EUR][1000 genomes]
rs12141649	0.96[EUR][1000 genomes]
rs4330914	0.89[ASN][1000 genomes]
rs4453033	0.91[EUR][1000 genomes]
rs4568823	0.88[EUR][1000 genomes]
rs4636451	0.88[EUR][1000 genomes]
rs57041991	0.91[EUR][1000 genomes]
rs6661598	0.91[EUR][1000 genomes]
rs6702233	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7414159	0.96[EUR][1000 genomes]
rs74148031	0.91[EUR][1000 genomes]
rs7531954	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1013538	chr1:223626487-223670776	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223661400-223671600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:223661400-223674000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:223666000-223667600	Weak transcription	Fetal Lung	lung
4	chr1:223666000-223670200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:223667200-223667600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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