Variant report

Variant	rs12123913
Chromosome Location	chr1:223707647-223707648
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10157965	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11261292	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11261293	0.87[EUR][1000 genomes]
rs12138605	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12140078	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12141379	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12141649	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16841918	1.00[CHB][hapmap]
rs4453033	0.91[EUR][1000 genomes]
rs4568823	0.87[EUR][1000 genomes]
rs4636451	0.87[EUR][1000 genomes]
rs57041991	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661598	0.91[EUR][1000 genomes]
rs6689010	0.91[EUR][1000 genomes]
rs6702233	0.84[EUR][1000 genomes]
rs7414159	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74148031	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7531954	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832681	chr1:223698048-224002691	Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv873209	chr1:223707647-223846564	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv873210	chr1:223707647-223856414	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv873211	chr1:223707647-223867631	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223706200-223717800	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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