Variant report

Variant	rs6689397
Chromosome Location	chr1:226987975-226987976
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:226985091..226988081-chr1:226993842..226996201,2	K562	blood:
2	chr1:226984451..226988514-chr1:226988953..226993290,5	K562	blood:

rs_ID	r²[population]
rs12119853	0.80[EUR][1000 genomes]
rs12125811	0.80[EUR][1000 genomes]
rs6426549	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6426550	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226983600-226988600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr1:226984400-226989200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:226985000-226988200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr1:226985000-226988800	Enhancers	Fetal Thymus	thymus
5	chr1:226985000-226990000	Enhancers	Primary T cells from cord blood	blood
6	chr1:226986000-226988600	Enhancers	Thymus	Thymus
7	chr1:226986400-226989200	Enhancers	Colon Smooth Muscle	Colon
8	chr1:226986800-226988000	Enhancers	HUVEC	blood vessel
9	chr1:226986800-226988400	Weak transcription	Fetal Intestine Small	intestine
10	chr1:226986800-226988800	Enhancers	Fetal Stomach	stomach
11	chr1:226986800-226988800	Enhancers	Rectal Smooth Muscle	rectum
12	chr1:226986800-226988800	Enhancers	GM12878-XiMat	blood
13	chr1:226986800-226989000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:226987000-226988600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr1:226987000-226989400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr1:226987000-226989600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr1:226987200-226988800	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr1:226987200-226989000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr1:226987200-227001400	Weak transcription	Right Atrium	heart
20	chr1:226987400-226988200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:226987400-226988600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr1:226987400-226991400	Weak transcription	Lung	lung
23	chr1:226987400-226992000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:226987400-226997400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr1:226987600-226988000	Enhancers	Fetal Muscle Trunk	muscle
26	chr1:226987600-226989200	Weak transcription	K562	blood
27	chr1:226987800-226988200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr1:226987800-226988200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr1:226987800-226988600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr1:226987800-226988600	Enhancers	Stomach Smooth Muscle	stomach
31	chr1:226987800-226988800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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