Variant report

Variant	rs12125811
Chromosome Location	chr1:226998840-226998841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226992626..226995987-chr1:226996668..226999035,4	K562	blood:
2	chr1:226998600..227001296-chr1:227008651..227010463,2	K562	blood:
3	chr1:226998001..226999981-chr1:227000720..227003139,2	MCF-7	breast:
4	chr1:226997587..227000105-chr1:227001744..227003689,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10799367	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10916057	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10916059	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11580744	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11582528	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11588886	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12119853	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12123818	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12127440	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130732	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12138310	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12143886	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12403248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12405779	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733650	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12747261	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12760155	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16846644	0.87[EUR][1000 genomes]
rs1800672	0.88[EUR][1000 genomes]
rs1800673	0.88[EUR][1000 genomes]
rs1800681	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2236912	0.85[EUR][1000 genomes]
rs3213436	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34081886	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35029375	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35213802	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35396772	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35519961	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35744376	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3820649	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3829979	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6426550	0.81[EUR][1000 genomes]
rs6426554	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6676065	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6676067	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6680780	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6689397	0.80[EUR][1000 genomes]
rs71648404	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs732479	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7512804	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226987200-227001400	Weak transcription	Right Atrium	heart
2	chr1:226989400-227002800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr1:226992800-227003200	Weak transcription	Lung	lung
4	chr1:226993600-227001400	Weak transcription	Thymus	Thymus
5	chr1:226994800-227007000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:226995000-227003400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:226995800-227009800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:226996600-226999200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:226996600-226999200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:226996800-226999000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:226996800-226999200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:226997400-226999200	Enhancers	Brain Substantia Nigra	brain
13	chr1:226997600-227001600	Weak transcription	Brain Angular Gyrus	brain
14	chr1:226997800-227001600	Weak transcription	Brain Anterior Caudate	brain
15	chr1:226998200-227001400	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:226998200-227002000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr1:226998200-227002400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:226998200-227002400	Weak transcription	Colon Smooth Muscle	Colon
19	chr1:226998400-227001600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:226998400-227001600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr1:226998400-227003200	Weak transcription	Pancreas	Pancrea
22	chr1:226998600-227001400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr1:226998600-227001400	Weak transcription	Fetal Muscle Leg	muscle
24	chr1:226998600-227001400	Weak transcription	Fetal Thymus	thymus
25	chr1:226998600-227001400	Weak transcription	HSMM	muscle
26	chr1:226998600-227001800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr1:226998600-227002000	Weak transcription	NH-A	brain
28	chr1:226998600-227002800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr1:226998800-226999000	Enhancers	Stomach Smooth Muscle	stomach
30	chr1:226998800-227001400	Weak transcription	HSMMtube	muscle
31	chr1:226998800-227001600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr1:226998800-227002000	Weak transcription	Placenta	Placenta
33	chr1:226998800-227002400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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