Variant report

Variant	rs12143886
Chromosome Location	chr1:226995776-226995777
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226994914..226997823-chr1:226999352..227001861,2	MCF-7	breast:
2	chr1:226925937..226927870-chr1:226993211..226996161,2	MCF-7	breast:
3	chr1:226992626..226995987-chr1:226996668..226999035,4	K562	blood:
4	chr1:226985091..226988081-chr1:226993842..226996201,2	K562	blood:

Variant related genes	Relation type
ENSG00000143772	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10799367	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10916057	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10916059	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11580744	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11582528	0.86[EUR][1000 genomes]
rs11588886	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12119853	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12123818	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12125811	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127440	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130732	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12138310	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12403248	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12405779	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733650	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12747261	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12760155	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16846644	0.86[EUR][1000 genomes]
rs1800672	0.88[EUR][1000 genomes]
rs1800673	0.88[EUR][1000 genomes]
rs1800681	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2236912	0.85[EUR][1000 genomes]
rs3213436	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34081886	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35029375	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35213802	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35396772	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35519961	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35744376	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3820649	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3829979	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6426550	0.80[EUR][1000 genomes]
rs6426554	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6676065	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6676067	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6680780	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71648404	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs732479	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7512804	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226987200-227001400	Weak transcription	Right Atrium	heart
2	chr1:226987400-226997400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:226989400-227002800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:226992800-227003200	Weak transcription	Lung	lung
5	chr1:226993600-227001400	Weak transcription	Thymus	Thymus
6	chr1:226994800-227007000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:226995000-226997400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:226995000-226998200	Weak transcription	Fetal Thymus	thymus
9	chr1:226995000-227003400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:226995200-226998200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:226995400-226995800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:226995600-226996600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:226995600-226997200	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links