Variant report

Variant	rs11580744
Chromosome Location	chr1:227018975-227018976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10799367	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10916057	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10916059	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11582528	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11588886	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12119853	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12123818	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12125811	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12127440	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12130732	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12132893	0.93[JPT][hapmap]
rs12138310	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12143886	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12403248	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12405779	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12733650	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12747261	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12760155	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16846644	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1794035	0.82[CEU][hapmap]
rs1800672	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1800673	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1800681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2236912	0.88[EUR][1000 genomes]
rs3213436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34081886	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35029375	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35213802	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35244407	0.80[EUR][1000 genomes]
rs35396772	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35519961	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35744376	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3820649	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3829979	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6426549	0.81[EUR][1000 genomes]
rs6426550	0.84[EUR][1000 genomes]
rs6426554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6676065	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6676067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6680780	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71648404	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs732479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7512804	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227015800-227020000	Weak transcription	Right Atrium	heart
2	chr1:227016000-227019600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:227016200-227019600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:227016200-227019600	Weak transcription	NHEK	skin
5	chr1:227018600-227019000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:227018600-227019000	Enhancers	Thymus	Thymus
7	chr1:227018800-227019000	Enhancers	Brain Anterior Caudate	brain

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