Variant report

Variant	rs12127440
Chromosome Location	chr1:227013329-227013330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226889929..226892747-chr1:227013300..227016016,3	MCF-7	breast:
2	chr1:227006518..227010110-chr1:227013321..227015905,5	K562	blood:
3	chr1:227005486..227010136-chr1:227013017..227015365,4	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10799367	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10916057	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10916059	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11580744	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11582528	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11588886	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12119853	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12123818	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12125811	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130732	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12138310	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12143886	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12403248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12405779	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733650	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12747261	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12760155	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16846644	0.87[EUR][1000 genomes]
rs1800672	0.89[EUR][1000 genomes]
rs1800673	0.89[EUR][1000 genomes]
rs1800681	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2236912	0.86[EUR][1000 genomes]
rs3213436	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34081886	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35029375	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35213802	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35396772	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35519961	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35744376	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3820649	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3829979	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6426550	0.82[EUR][1000 genomes]
rs6426554	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6676065	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6676067	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6680780	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71648404	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs732479	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7512804	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227003400-227015000	Weak transcription	Thymus	Thymus
2	chr1:227009400-227015200	Weak transcription	NHEK	skin
3	chr1:227009600-227014800	Weak transcription	Fetal Kidney	kidney
4	chr1:227009800-227014600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:227009800-227015200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:227009800-227015200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:227009800-227015200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:227009800-227015600	Weak transcription	Osteobl	bone
9	chr1:227010000-227014600	Weak transcription	Adipose Nuclei	Adipose
10	chr1:227010000-227014600	Weak transcription	Colonic Mucosa	Colon
11	chr1:227010000-227014800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:227010000-227015000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:227010000-227015200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr1:227010000-227015200	Weak transcription	Esophagus	oesophagus
15	chr1:227010000-227015200	Weak transcription	Right Ventricle	heart
16	chr1:227010000-227015200	Weak transcription	HSMM	muscle
17	chr1:227010000-227015200	Weak transcription	HUVEC	blood vessel
18	chr1:227010000-227015600	Weak transcription	Left Ventricle	heart
19	chr1:227010200-227013600	Weak transcription	Placenta	Placenta
20	chr1:227010200-227014800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr1:227010200-227014800	Weak transcription	NHDF-Ad	bronchial
22	chr1:227010200-227015200	Weak transcription	Fetal Lung	lung
23	chr1:227010200-227015200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr1:227010200-227015200	Weak transcription	Right Atrium	heart
25	chr1:227010600-227014800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr1:227011000-227013800	Enhancers	Primary T cells from cord blood	blood
27	chr1:227011000-227014600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr1:227011200-227015200	Enhancers	Brain Substantia Nigra	brain
29	chr1:227011400-227013800	Enhancers	Primary B cells from peripheral blood	blood
30	chr1:227011400-227013800	Enhancers	Fetal Thymus	thymus
31	chr1:227011400-227015200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr1:227011400-227015400	Enhancers	Brain Cingulate Gyrus	brain
33	chr1:227011400-227016000	Enhancers	Brain Hippocampus Middle	brain
34	chr1:227011600-227013400	Weak transcription	Fetal Stomach	stomach
35	chr1:227011600-227014600	Weak transcription	Colon Smooth Muscle	Colon
36	chr1:227011600-227015400	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr1:227011600-227015600	Enhancers	Brain Anterior Caudate	brain
38	chr1:227011800-227013800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr1:227011800-227015000	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr1:227011800-227015200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr1:227012000-227013600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr1:227012000-227013800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr1:227012000-227013800	Enhancers	Brain Angular Gyrus	brain
44	chr1:227012000-227014600	Weak transcription	Spleen	Spleen
45	chr1:227012400-227013400	Flanking Active TSS	GM12878-XiMat	blood
46	chr1:227012600-227015200	Weak transcription	Primary B cells from cord blood	blood
47	chr1:227012800-227013600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr1:227013000-227013800	Enhancers	Stomach Smooth Muscle	stomach
49	chr1:227013000-227015200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr1:227013000-227015400	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links