Variant report

Variant	rs12733650
Chromosome Location	chr1:227027304-227027305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10799367	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10916057	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10916059	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11580744	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11582528	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11588886	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12119853	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12123818	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12125811	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12127440	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12130732	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12138310	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12143886	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12403248	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12405779	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12747261	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12760155	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16846644	0.89[EUR][1000 genomes]
rs1800672	0.91[EUR][1000 genomes]
rs1800673	0.91[EUR][1000 genomes]
rs1800681	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2236912	0.88[EUR][1000 genomes]
rs3213436	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34081886	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35029375	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35213802	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35396772	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35519961	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35744376	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3820649	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3829979	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6426549	0.81[EUR][1000 genomes]
rs6426550	0.83[EUR][1000 genomes]
rs6426554	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6676065	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6676067	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6680780	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71648404	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs732479	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7512804	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4766	chr1:227025954-227070961	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227025800-227027400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr1:227026600-227028000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:227026800-227034200	Weak transcription	HMEC	breast
4	chr1:227026800-227043800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:227027000-227034400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links