Variant report

Variant	rs35396772
Chromosome Location	chr1:227014990-227014991
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:226898679..226899853-chr1:227014945..227016440,5	MCF-7	breast:
2	chr1:226827872..226829435-chr1:227013407..227016393,2	MCF-7	breast:
3	chr1:226889929..226892747-chr1:227013300..227016016,3	MCF-7	breast:
4	chr1:226834406..226836488-chr1:227013877..227016506,3	K562	blood:
5	chr1:227006518..227010110-chr1:227013321..227015905,5	K562	blood:
6	chr1:226834406..226836185-chr1:227013877..227015402,2	K562	blood:
7	chr1:227005486..227010136-chr1:227013017..227015365,4	K562	blood:
8	chr1:227014350..227016521-chr17:57915564..57918181,2	MCF-7	breast:

No data

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10799367	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10916057	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10916059	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11580744	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11582528	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11588886	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12119853	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12123818	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12125811	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127440	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130732	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12138310	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12143886	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12403248	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12405779	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733650	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12747261	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12760155	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16846644	0.89[EUR][1000 genomes]
rs1800672	0.91[EUR][1000 genomes]
rs1800673	0.91[EUR][1000 genomes]
rs1800681	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2236912	0.87[EUR][1000 genomes]
rs3213436	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34081886	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35029375	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35213802	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35244407	0.81[EUR][1000 genomes]
rs35519961	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35744376	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3820649	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3829979	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6426549	0.81[EUR][1000 genomes]
rs6426550	0.83[EUR][1000 genomes]
rs6426554	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6676065	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6676067	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6680780	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71648404	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs732479	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7512804	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227003400-227015000	Weak transcription	Thymus	Thymus
2	chr1:227009400-227015200	Weak transcription	NHEK	skin
3	chr1:227009800-227015200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:227009800-227015200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:227009800-227015200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:227009800-227015600	Weak transcription	Osteobl	bone
7	chr1:227010000-227015000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:227010000-227015200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr1:227010000-227015200	Weak transcription	Esophagus	oesophagus
10	chr1:227010000-227015200	Weak transcription	Right Ventricle	heart
11	chr1:227010000-227015200	Weak transcription	HSMM	muscle
12	chr1:227010000-227015200	Weak transcription	HUVEC	blood vessel
13	chr1:227010000-227015600	Weak transcription	Left Ventricle	heart
14	chr1:227010200-227015200	Weak transcription	Fetal Lung	lung
15	chr1:227010200-227015200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr1:227010200-227015200	Weak transcription	Right Atrium	heart
17	chr1:227011200-227015200	Enhancers	Brain Substantia Nigra	brain
18	chr1:227011400-227015200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr1:227011400-227015400	Enhancers	Brain Cingulate Gyrus	brain
20	chr1:227011400-227016000	Enhancers	Brain Hippocampus Middle	brain
21	chr1:227011600-227015400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr1:227011600-227015600	Enhancers	Brain Anterior Caudate	brain
23	chr1:227011800-227015000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr1:227011800-227015200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr1:227012600-227015200	Weak transcription	Primary B cells from cord blood	blood
26	chr1:227013000-227015200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:227013000-227015400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr1:227013200-227015000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr1:227013200-227016400	Enhancers	Fetal Muscle Trunk	muscle
30	chr1:227013400-227016200	Enhancers	GM12878-XiMat	blood
31	chr1:227013600-227015600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr1:227013600-227016200	Enhancers	Placenta	Placenta
33	chr1:227013800-227015000	Weak transcription	Fetal Thymus	thymus
34	chr1:227013800-227015200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr1:227014200-227016200	Enhancers	Fetal Muscle Leg	muscle
36	chr1:227014400-227015800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:227014600-227015200	Enhancers	Stomach Smooth Muscle	stomach
38	chr1:227014600-227015400	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr1:227014600-227015400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr1:227014600-227015400	Enhancers	Rectal Smooth Muscle	rectum
41	chr1:227014600-227015400	Enhancers	Spleen	Spleen
42	chr1:227014600-227015600	Enhancers	Adipose Nuclei	Adipose
43	chr1:227014600-227015600	Enhancers	Brain Angular Gyrus	brain
44	chr1:227014600-227015600	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr1:227014600-227015800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr1:227014600-227015800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr1:227014600-227015800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr1:227014600-227015800	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr1:227014600-227015800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr1:227014600-227015800	Enhancers	Colonic Mucosa	Colon

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