Variant report

Variant	rs11582528
Chromosome Location	chr1:227007649-227007650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:227006518..227010110-chr1:227013321..227015905,5	K562	blood:
2	chr1:227005486..227010136-chr1:227013017..227015365,4	K562	blood:
3	chr1:227001349..227004344-chr1:227005535..227008816,3	MCF-7	breast:
4	chr1:226888820..226891466-chr1:227007435..227009237,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10799367	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11580744	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12119853	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12125811	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12127440	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12138310	0.80[EUR][1000 genomes]
rs12143886	0.86[EUR][1000 genomes]
rs12403248	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12405779	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12733650	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35396772	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35744376	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7512804	0.85[EUR][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226995800-227009800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:227003200-227008000	Weak transcription	Right Atrium	heart
3	chr1:227003200-227008200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:227003400-227007800	Weak transcription	Brain Substantia Nigra	brain
5	chr1:227003400-227008000	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:227003400-227008200	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:227003400-227008200	Weak transcription	Fetal Lung	lung
8	chr1:227003400-227008200	Weak transcription	Spleen	Spleen
9	chr1:227003400-227008400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:227003400-227008400	Weak transcription	Osteobl	bone
11	chr1:227003400-227008600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:227003400-227008600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:227003400-227008600	Weak transcription	Brain Angular Gyrus	brain
14	chr1:227003400-227008600	Weak transcription	HSMM	muscle
15	chr1:227003400-227008600	Weak transcription	HSMMtube	muscle
16	chr1:227003400-227008800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:227003400-227009200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr1:227003400-227009200	Weak transcription	Right Ventricle	heart
19	chr1:227003400-227009400	Weak transcription	Small Intestine	intestine
20	chr1:227003400-227015000	Weak transcription	Thymus	Thymus
21	chr1:227003600-227008200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr1:227003600-227008800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:227003600-227008800	Weak transcription	Psoas Muscle	Psoas
24	chr1:227003600-227009200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr1:227004000-227008200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr1:227004000-227008800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr1:227004000-227009200	Weak transcription	Esophagus	oesophagus
28	chr1:227004000-227009400	Weak transcription	Fetal Thymus	thymus
29	chr1:227004200-227008600	Weak transcription	Brain Anterior Caudate	brain
30	chr1:227004200-227008600	Weak transcription	Fetal Intestine Small	intestine
31	chr1:227004200-227009000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr1:227004200-227011400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr1:227005000-227008200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:227005000-227008600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:227005000-227008600	Weak transcription	HMEC	breast
36	chr1:227005000-227008800	Weak transcription	NHEK	skin
37	chr1:227005000-227009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr1:227005200-227008000	Weak transcription	NHDF-Ad	bronchial
39	chr1:227005200-227008400	Weak transcription	NHLF	lung
40	chr1:227005200-227008600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr1:227005200-227008600	Weak transcription	NH-A	brain
42	chr1:227005200-227008800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr1:227005200-227009200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:227006800-227010800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr1:227007000-227008000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr1:227007000-227008600	Enhancers	Placenta	Placenta
47	chr1:227007000-227009600	Enhancers	Hela-S3	cervix
48	chr1:227007000-227010000	Enhancers	Adipose Nuclei	Adipose
49	chr1:227007200-227010200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr1:227007200-227011600	Enhancers	Fetal Stomach	stomach

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