Variant report

Variant	rs6689878
Chromosome Location	chr1:168976709-168976710
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10919029	0.95[AFR][1000 genomes]
rs10919031	1.00[AMR][1000 genomes]
rs12059250	1.00[AMR][1000 genomes]
rs12085407	0.95[AFR][1000 genomes]
rs12089015	0.95[AFR][1000 genomes]
rs12090776	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095033	0.95[AFR][1000 genomes]
rs6427171	0.95[AFR][1000 genomes]
rs6665736	1.00[AMR][1000 genomes]
rs6701475	0.95[AFR][1000 genomes]
rs7548999	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv947332	chr1:168970371-168977238	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168973600-168980200	Weak transcription	Left Ventricle	heart
2	chr1:168973600-168984000	Weak transcription	Aorta	Aorta
3	chr1:168973800-168979200	Weak transcription	HepG2	liver
4	chr1:168975400-168979200	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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