Variant report

Variant	rs6427171
Chromosome Location	chr1:168974161-168974162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10919029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12085407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090776	0.91[AFR][1000 genomes]
rs12095033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57187559	1.00[EUR][1000 genomes]
rs58330569	1.00[EUR][1000 genomes]
rs6689878	0.95[AFR][1000 genomes]
rs6701475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028610	1.00[EUR][1000 genomes]
rs73028615	1.00[EUR][1000 genomes]
rs73028627	1.00[EUR][1000 genomes]
rs73028633	1.00[EUR][1000 genomes]
rs73030659	1.00[EUR][1000 genomes]
rs73030671	1.00[EUR][1000 genomes]
rs73042054	1.00[EUR][1000 genomes]
rs73042074	1.00[EUR][1000 genomes]
rs73042088	1.00[EUR][1000 genomes]
rs73042095	1.00[EUR][1000 genomes]
rs73043974	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv947332	chr1:168970371-168977238	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168972800-168974200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:168972800-168974600	Enhancers	Brain Substantia Nigra	brain
3	chr1:168972800-168975400	Enhancers	Hela-S3	cervix
4	chr1:168972800-168976000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:168973000-168974200	Enhancers	A549	lung
6	chr1:168973000-168975800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:168973200-168974200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:168973200-168974800	Enhancers	Brain Hippocampus Middle	brain
9	chr1:168973600-168975800	Enhancers	Brain Angular Gyrus	brain
10	chr1:168973600-168980200	Weak transcription	Left Ventricle	heart
11	chr1:168973600-168984000	Weak transcription	Aorta	Aorta
12	chr1:168973800-168975000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:168973800-168975000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:168973800-168979200	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links