Variant report

Variant	rs73028633
Chromosome Location	chr1:168940049-168940050
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs57187559	1.00[EUR][1000 genomes]
rs58330569	1.00[EUR][1000 genomes]
rs6427171	1.00[EUR][1000 genomes]
rs73028610	1.00[EUR][1000 genomes]
rs73028615	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73028627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73028635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73030659	1.00[EUR][1000 genomes]
rs73030671	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73042054	1.00[EUR][1000 genomes]
rs73042074	1.00[EUR][1000 genomes]
rs73042088	1.00[EUR][1000 genomes]
rs73042095	1.00[EUR][1000 genomes]
rs73043974	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168939600-168940400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:168939600-168940800	Enhancers	Psoas Muscle	Psoas
3	chr1:168939600-168940800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr1:168939600-168941200	Enhancers	Brain Cingulate Gyrus	brain
5	chr1:168939800-168940200	Enhancers	Brain Anterior Caudate	brain
6	chr1:168939800-168940200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr1:168939800-168941000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:168939800-168941000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr1:168939800-168941000	Enhancers	Brain Angular Gyrus	brain
10	chr1:168939800-168941000	Enhancers	Brain Hippocampus Middle	brain
11	chr1:168939800-168941000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr1:168939800-168941600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:168939800-168942400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:168939800-168942400	Enhancers	Ovary	ovary
15	chr1:168939800-168943000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr1:168940000-168940200	Enhancers	Brain Substantia Nigra	brain
17	chr1:168940000-168940800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr1:168940000-168940800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr1:168940000-168940800	Enhancers	Right Ventricle	heart
20	chr1:168940000-168941000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr1:168940000-168941000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr1:168940000-168941000	Enhancers	Right Atrium	heart
23	chr1:168940000-168942600	Enhancers	Fetal Lung	lung

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