Variant report
| Variant | rs73042074 |
|---|---|
| Chromosome Location | chr1:168901163-168901164 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:168892480..168894415-chr1:168900129..168902530,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12401569 | 1.00[EUR][1000 genomes] |
| rs12401592 | 1.00[EUR][1000 genomes] |
| rs12403860 | 1.00[EUR][1000 genomes] |
| rs12411200 | 1.00[EUR][1000 genomes] |
| rs35915405 | 1.00[EUR][1000 genomes] |
| rs57187559 | 1.00[EUR][1000 genomes] |
| rs58330569 | 1.00[EUR][1000 genomes] |
| rs58493284 | 1.00[EUR][1000 genomes] |
| rs6427171 | 1.00[EUR][1000 genomes] |
| rs73028610 | 1.00[EUR][1000 genomes] |
| rs73028615 | 1.00[EUR][1000 genomes] |
| rs73028627 | 1.00[EUR][1000 genomes] |
| rs73028633 | 1.00[EUR][1000 genomes] |
| rs73030659 | 1.00[EUR][1000 genomes] |
| rs73030671 | 1.00[EUR][1000 genomes] |
| rs73042054 | 1.00[EUR][1000 genomes] |
| rs73042088 | 1.00[EUR][1000 genomes] |
| rs73042095 | 1.00[EUR][1000 genomes] |
| rs73043974 | 1.00[EUR][1000 genomes] |
| rs74121379 | 1.00[EUR][1000 genomes] |
| rs74121380 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869415 | chr1:168467284-169153863 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 44 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:168896400-168901600 | Weak transcription | Fetal Heart | heart |
