Variant report

Variant	rs73042054
Chromosome Location	chr1:168885734-168885735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12401569	1.00[EUR][1000 genomes]
rs12401592	1.00[EUR][1000 genomes]
rs12403860	1.00[EUR][1000 genomes]
rs12411200	1.00[EUR][1000 genomes]
rs35915405	1.00[EUR][1000 genomes]
rs57187559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58330569	1.00[EUR][1000 genomes]
rs58493284	1.00[EUR][1000 genomes]
rs6427171	1.00[EUR][1000 genomes]
rs73028610	1.00[EUR][1000 genomes]
rs73028615	1.00[EUR][1000 genomes]
rs73028627	1.00[EUR][1000 genomes]
rs73028633	1.00[EUR][1000 genomes]
rs73030659	1.00[EUR][1000 genomes]
rs73030671	1.00[EUR][1000 genomes]
rs73042074	1.00[EUR][1000 genomes]
rs73042088	1.00[EUR][1000 genomes]
rs73042095	1.00[EUR][1000 genomes]
rs73043974	1.00[EUR][1000 genomes]
rs74121379	1.00[EUR][1000 genomes]
rs74121380	1.00[EUR][1000 genomes]
rs999310	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168878000-168886600	Weak transcription	Fetal Lung	lung
2	chr1:168879200-168890400	Weak transcription	Aorta	Aorta
3	chr1:168882000-168886400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:168882200-168887600	Weak transcription	Pancreas	Pancrea
5	chr1:168883400-168888200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:168884000-168886400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:168884000-168886600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:168884000-168886800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:168884000-168887200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:168884000-168888200	Weak transcription	Brain Germinal Matrix	brain
11	chr1:168884200-168887000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:168884200-168887400	Weak transcription	Left Ventricle	heart
13	chr1:168884400-168886600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:168884400-168889800	Weak transcription	Psoas Muscle	Psoas
15	chr1:168885600-168888200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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