Variant report

Variant	rs73028635
Chromosome Location	chr1:168940805-168940806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168875814..168878079-chr1:168940706..168942941,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73028615	0.90[AFR][1000 genomes]
rs73028627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73030671	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168939600-168941200	Enhancers	Brain Cingulate Gyrus	brain
2	chr1:168939800-168941000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:168939800-168941000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:168939800-168941000	Enhancers	Brain Angular Gyrus	brain
5	chr1:168939800-168941000	Enhancers	Brain Hippocampus Middle	brain
6	chr1:168939800-168941000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr1:168939800-168941600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:168939800-168942400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:168939800-168942400	Enhancers	Ovary	ovary
10	chr1:168939800-168943000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:168940000-168941000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr1:168940000-168941000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr1:168940000-168941000	Enhancers	Right Atrium	heart
14	chr1:168940000-168942600	Enhancers	Fetal Lung	lung
15	chr1:168940200-168941000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:168940200-168941000	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr1:168940200-168941000	Enhancers	Left Ventricle	heart
18	chr1:168940200-168941200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr1:168940200-168942000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr1:168940400-168941000	Enhancers	Fetal Stomach	stomach
21	chr1:168940400-168941600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr1:168940400-168942000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:168940600-168941800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr1:168940800-168941000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:168940800-168941000	Enhancers	Brain Substantia Nigra	brain
26	chr1:168940800-168942000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr1:168940800-168942000	Weak transcription	Colon Smooth Muscle	Colon
28	chr1:168940800-168942000	Weak transcription	Fetal Muscle Leg	muscle
29	chr1:168940800-168942000	Weak transcription	Psoas Muscle	Psoas
30	chr1:168940800-168942600	Weak transcription	Right Ventricle	heart
31	chr1:168940800-168943200	Weak transcription	Aorta	Aorta

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