Variant report

Variant	rs66903601
Chromosome Location	chr19:36445613-36445614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36427463..36430221-chr19:36445078..36447269,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126243	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17706323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34915088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73034029	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
5	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	nsv833812	chr19:36331913-36507594	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv833813	chr19:36341181-36499431	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
8	esv3439894	chr19:36445203-36445955	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36430000-36450000	Weak transcription	Right Atrium	heart
2	chr19:36436200-36449000	Weak transcription	Spleen	Spleen
3	chr19:36436600-36448200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr19:36443000-36447200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr19:36443200-36446600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr19:36444400-36446200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr19:36444600-36446200	Weak transcription	Primary B cells from cord blood	blood
8	chr19:36444800-36446600	Enhancers	Primary T cells from cord blood	blood
9	chr19:36445000-36446200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr19:36445000-36447000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr19:36445000-36447000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr19:36445000-36447200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr19:36445000-36447200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr19:36445000-36447400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr19:36445000-36448000	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr19:36445000-36449600	Enhancers	Primary T cells fromperipheralblood	blood
17	chr19:36445200-36446800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr19:36445200-36447400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr19:36445200-36447800	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr19:36445200-36449600	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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