Variant report

Variant	rs17706323
Chromosome Location	chr19:36444363-36444364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36440986..36443512-chr19:36443562..36445464,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2619197	1.00[YRI][hapmap]
rs34915088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3817624	1.00[CEU][hapmap]
rs66903601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7250473	1.00[LWK][hapmap]
rs7258441	1.00[YRI][hapmap]
rs73034029	0.88[EUR][1000 genomes]
rs8101244	1.00[YRI][hapmap]
rs8110206	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
5	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	nsv833812	chr19:36331913-36507594	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv833813	chr19:36341181-36499431	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36430000-36450000	Weak transcription	Right Atrium	heart
2	chr19:36435800-36444400	Weak transcription	Gastric	stomach
3	chr19:36436000-36444800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr19:36436200-36449000	Weak transcription	Spleen	Spleen
5	chr19:36436600-36444800	Weak transcription	Lung	lung
6	chr19:36436600-36448200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:36437600-36445600	Weak transcription	Fetal Brain Female	brain
8	chr19:36443000-36444600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr19:36443000-36447200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr19:36443200-36445200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr19:36443200-36445200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:36443200-36446600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr19:36443400-36445000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr19:36443400-36445200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr19:36443800-36444600	Enhancers	Primary B cells from cord blood	blood
16	chr19:36443800-36444800	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr19:36443800-36445000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
18	chr19:36443800-36445000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr19:36443800-36445000	Enhancers	GM12878-XiMat	blood
20	chr19:36443800-36445200	Enhancers	Primary B cells from peripheral blood	blood
21	chr19:36443800-36445200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr19:36443800-36445200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr19:36443800-36445200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr19:36444000-36444400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr19:36444000-36444400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr19:36444000-36444400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr19:36444000-36444600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr19:36444000-36444600	Flanking Active TSS	Thymus	Thymus
29	chr19:36444000-36444800	Flanking Active TSS	Fetal Thymus	thymus
30	chr19:36444000-36445000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr19:36444000-36445000	Bivalent Enhancer	Placenta	Placenta
32	chr19:36444000-36445000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr19:36444000-36445200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr19:36444000-36445400	Enhancers	Dnd41	blood
35	chr19:36444200-36444400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr19:36444200-36444600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr19:36444200-36444600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr19:36444200-36444600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
39	chr19:36444200-36444800	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr19:36444200-36444800	Enhancers	HUVEC	blood vessel
41	chr19:36444200-36445000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr19:36444200-36445200	Enhancers	Primary hematopoietic stem cells	blood

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