Variant report

Variant	rs66909667
Chromosome Location	chr11:86350028-86350029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86345410..86347094-chr11:86347295..86350272,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10501626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285344	0.85[ASN][1000 genomes]
rs12573953	0.93[ASN][1000 genomes]
rs12575285	0.98[ASN][1000 genomes]
rs17211458	0.97[ASN][1000 genomes]
rs17211563	0.98[ASN][1000 genomes]
rs17211584	0.97[ASN][1000 genomes]
rs17818784	0.98[ASN][1000 genomes]
rs17818845	0.89[ASN][1000 genomes]
rs17819523	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17819683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945142	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226566	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471780	0.98[ASN][1000 genomes]
rs539214	0.98[ASN][1000 genomes]
rs56140354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56935647	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs581796	0.98[ASN][1000 genomes]
rs60229086	0.91[ASN][1000 genomes]
rs60379752	0.91[ASN][1000 genomes]
rs623785	0.94[ASN][1000 genomes]
rs659301	0.99[ASN][1000 genomes]
rs67112634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs686768	0.90[ASN][1000 genomes]
rs687138	0.98[ASN][1000 genomes]
rs72955481	0.91[ASN][1000 genomes]
rs72957414	0.98[ASN][1000 genomes]
rs72957420	0.98[ASN][1000 genomes]
rs72957437	0.97[ASN][1000 genomes]
rs72957439	0.97[ASN][1000 genomes]
rs72957441	0.97[ASN][1000 genomes]
rs72957457	0.93[ASN][1000 genomes]
rs72957470	0.89[ASN][1000 genomes]
rs72957473	0.89[ASN][1000 genomes]
rs72957476	0.89[ASN][1000 genomes]
rs72959410	0.91[ASN][1000 genomes]
rs72959413	0.88[ASN][1000 genomes]
rs72959421	0.88[ASN][1000 genomes]
rs72959427	0.89[ASN][1000 genomes]
rs72959431	0.87[ASN][1000 genomes]
rs7480835	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667489	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv555704	chr11:86344677-86386784	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86340000-86357200	Weak transcription	Fetal Brain Female	brain
2	chr11:86341000-86355400	Weak transcription	Adipose Nuclei	Adipose
3	chr11:86341600-86358800	Weak transcription	Brain Anterior Caudate	brain
4	chr11:86342200-86351400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:86342200-86353200	Weak transcription	Aorta	Aorta
6	chr11:86342200-86356400	Weak transcription	Fetal Stomach	stomach
7	chr11:86344000-86373800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:86344200-86352800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:86344600-86354600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:86344800-86355400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:86344800-86355800	Weak transcription	Pancreas	Pancrea
12	chr11:86345400-86353000	Weak transcription	HSMM	muscle
13	chr11:86346400-86351200	Weak transcription	Gastric	stomach
14	chr11:86346600-86351800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:86346600-86359600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:86346800-86351200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:86347200-86351600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:86347200-86352600	Weak transcription	HUVEC	blood vessel
19	chr11:86347800-86350400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:86348400-86350400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:86348400-86350800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:86348400-86350800	Enhancers	NHDF-Ad	bronchial
23	chr11:86348800-86350600	Enhancers	HMEC	breast
24	chr11:86348800-86351600	Enhancers	A549	lung
25	chr11:86348800-86361600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:86349000-86350400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:86349000-86350600	Enhancers	NHEK	skin
28	chr11:86349000-86350600	Enhancers	NHLF	lung
29	chr11:86349000-86350600	Enhancers	Osteobl	bone
30	chr11:86349000-86351000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:86349200-86350800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:86349200-86351200	Weak transcription	Ovary	ovary
33	chr11:86349200-86351200	Enhancers	Psoas Muscle	Psoas
34	chr11:86349400-86353600	Weak transcription	Left Ventricle	heart
35	chr11:86349400-86356000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:86349600-86353000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:86349800-86351800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:86350000-86350200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:86350000-86350200	Enhancers	Fetal Kidney	kidney
40	chr11:86350000-86350600	Enhancers	Colon Smooth Muscle	Colon
41	chr11:86350000-86350600	Enhancers	NH-A	brain

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