Variant report

Variant	rs72955481
Chromosome Location	chr11:86321718-86321719
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86166895..86167729-chr11:86320988..86321978,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10501626	0.91[ASN][1000 genomes]
rs12285344	0.83[ASN][1000 genomes]
rs12573953	0.88[ASN][1000 genomes]
rs12575285	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12575580	0.82[EUR][1000 genomes]
rs17211458	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17211563	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17211584	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17818784	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17818845	0.84[ASN][1000 genomes]
rs17819523	0.93[ASN][1000 genomes]
rs17819683	0.91[ASN][1000 genomes]
rs1945142	0.91[ASN][1000 genomes]
rs2226566	0.91[ASN][1000 genomes]
rs471780	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs539214	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56095595	0.82[EUR][1000 genomes]
rs56140354	0.91[ASN][1000 genomes]
rs56935647	0.94[ASN][1000 genomes]
rs581796	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60229086	0.86[ASN][1000 genomes]
rs60379752	0.86[ASN][1000 genomes]
rs623785	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs659301	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66909667	0.91[ASN][1000 genomes]
rs67112634	0.91[ASN][1000 genomes]
rs686768	0.83[ASN][1000 genomes]
rs687138	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72957414	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs72957420	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72957437	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72957439	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72957441	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72957457	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72957470	0.84[ASN][1000 genomes]
rs72957473	0.84[ASN][1000 genomes]
rs72957476	0.84[ASN][1000 genomes]
rs72959410	0.86[ASN][1000 genomes]
rs72959413	0.84[ASN][1000 genomes]
rs72959421	0.84[ASN][1000 genomes]
rs72959427	0.85[ASN][1000 genomes]
rs72959431	0.82[ASN][1000 genomes]
rs7480835	0.91[ASN][1000 genomes]
rs9667489	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv898057	chr11:86306401-86335459	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86318400-86321800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:86319400-86322000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:86319600-86321800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:86319600-86322000	Enhancers	A549	lung
5	chr11:86319600-86328200	Weak transcription	Ovary	ovary
6	chr11:86320000-86321800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:86320000-86322200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:86320000-86325000	Weak transcription	Adipose Nuclei	Adipose
9	chr11:86320000-86330400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:86320200-86321800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:86321000-86321800	Enhancers	Stomach Smooth Muscle	stomach
12	chr11:86321000-86322000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:86321000-86322200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:86321200-86322000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr11:86321200-86322200	Enhancers	Fetal Heart	heart
16	chr11:86321200-86322400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr11:86321400-86321800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:86321400-86321800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:86321400-86322000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:86321400-86322200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr11:86321400-86322200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:86321400-86322200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr11:86321400-86322400	Enhancers	Rectal Smooth Muscle	rectum
24	chr11:86321400-86322600	Enhancers	Colon Smooth Muscle	Colon
25	chr11:86321600-86321800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr11:86321600-86322000	Enhancers	H1 Cell Line	embryonic stem cell
27	chr11:86321600-86322000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:86321600-86322000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:86321600-86322000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:86321600-86322000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:86321600-86322000	Enhancers	Left Ventricle	heart
32	chr11:86321600-86322000	Enhancers	Pancreas	Pancrea
33	chr11:86321600-86322200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:86321600-86322200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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