Variant report

Variant	rs66921644
Chromosome Location	chr11:119835014-119835015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119714767..119716400-chr11:119833403..119835502,2	MCF-7	breast:
2	chr11:119833649..119836146-chr11:119840215..119843105,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs34955847	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35962410	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs56031122	1.00[AFR][1000 genomes]
rs72994607	1.00[AFR][1000 genomes]
rs72994656	1.00[AFR][1000 genomes]
rs73010607	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119817200-119835600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:119833400-119836400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:119834200-119835200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:119834200-119835200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:119834200-119836200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:119834200-119836600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:119834200-119837200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:119834400-119836000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:119834400-119836200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:119834400-119836400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:119834600-119836200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:119834600-119836400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr11:119834600-119836400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:119834600-119836400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr11:119834600-119836400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:119834800-119836000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr11:119835000-119835600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:119835000-119835600	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr11:119835000-119836000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr11:119835000-119836200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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